Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilU   Type   Machinery gene
Locus tag   AB3X08_RS18705 Genome accession   NZ_CP162490
Coordinates   4399138..4400274 (+) Length   378 a.a.
NCBI ID   WP_369934248.1    Uniprot ID   -
Organism   Xanthomonas tesorieronis strain DAR 34887     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4394138..4405274
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3X08_RS18680 (AB3X08_18675) - 4394344..4395537 (-) 1194 WP_369934244.1 cystathionine gamma-synthase -
  AB3X08_RS18685 (AB3X08_18680) - 4395618..4396988 (-) 1371 WP_369934245.1 pyridoxal-phosphate dependent enzyme -
  AB3X08_RS18690 (AB3X08_18685) - 4397192..4397416 (-) 225 WP_009575526.1 YdcH family protein -
  AB3X08_RS18695 (AB3X08_18690) - 4397753..4398649 (-) 897 WP_369934246.1 OmpA family protein -
  AB3X08_RS18700 (AB3X08_18695) - 4398646..4399038 (-) 393 WP_369934247.1 DUF4398 domain-containing protein -
  AB3X08_RS18705 (AB3X08_18700) pilU 4399138..4400274 (+) 1137 WP_369934248.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  AB3X08_RS18710 (AB3X08_18705) maiA 4400372..4401031 (-) 660 WP_369934249.1 maleylacetoacetate isomerase -
  AB3X08_RS18715 (AB3X08_18710) - 4401121..4402110 (-) 990 WP_369934250.1 fumarylacetoacetate hydrolase family protein -
  AB3X08_RS18720 (AB3X08_18715) - 4402486..4403850 (+) 1365 WP_369934251.1 DEAD/DEAH box helicase -
  AB3X08_RS18725 (AB3X08_18720) queD 4403982..4404341 (+) 360 WP_369934252.1 6-carboxytetrahydropterin synthase QueD -
  AB3X08_RS18730 (AB3X08_18725) - 4404623..4404994 (+) 372 WP_369934253.1 phasin family protein -

Sequence

Protein


Download         Length: 378 a.a.        Molecular weight: 41947.23 Da        Isoelectric Point: 6.3220

>NTDB_id=1026479 AB3X08_RS18705 WP_369934248.1 4399138..4400274(+) (pilU) [Xanthomonas tesorieronis strain DAR 34887]
MDIGYFLKLMTEKNASDMFLTTGAPVYIKIEGKLYPLGATGLPPGMVKKIAYSLMDEGQVPQFERELELNMAIALQDAGR
FRVNVFKQRGEVGMVIRAIRSKIPSIEELHLPQVLKDVIMTPRGLVLVVGSTGSGKSTSLASMIDHRNSTTTGHILTIED
PIEYLHKHKMSIVNQREVGLDTHAFHNALKNAMREAPDVILIGEILDATTMEAAIAFAETGHLCLATLHSNNADQTIERI
LNFFPESAHKNVLMNLALNLRAVISQRLVKDKNERRRPATEVLLNTPMIRDLLRRGQVHEIKAAMEESLEEGMETFDQCL
FRMVKSGEIEQEEALRAADSRDGLALKFRLSEGSSGEHDPYADYDGGASSPRITHGFG

Nucleotide


Download         Length: 1137 bp        

>NTDB_id=1026479 AB3X08_RS18705 WP_369934248.1 4399138..4400274(+) (pilU) [Xanthomonas tesorieronis strain DAR 34887]
ATGGATATCGGCTACTTCCTGAAGCTGATGACCGAAAAGAACGCCTCGGACATGTTCCTGACCACGGGAGCACCGGTCTA
TATCAAGATCGAAGGCAAGCTGTACCCGCTCGGCGCCACCGGCCTGCCGCCGGGCATGGTCAAGAAGATCGCCTATTCGC
TGATGGACGAGGGCCAGGTGCCGCAGTTCGAGCGCGAGCTTGAGCTGAACATGGCCATCGCGCTGCAGGACGCCGGCCGC
TTCCGGGTCAACGTGTTCAAGCAGCGCGGCGAGGTCGGCATGGTGATCCGCGCGATCCGCAGCAAGATCCCCAGCATCGA
GGAACTGCACCTGCCGCAGGTGCTGAAGGACGTGATCATGACCCCGCGCGGGCTGGTCCTGGTGGTCGGCTCGACCGGCT
CGGGCAAGTCCACCTCGCTGGCGTCGATGATCGACCACCGCAACAGCACCACCACCGGGCACATCCTCACCATCGAGGAC
CCGATCGAATACCTGCACAAGCACAAGATGTCGATCGTCAACCAGCGCGAGGTCGGCCTGGACACCCATGCCTTCCACAA
CGCGCTGAAGAACGCGATGCGCGAGGCGCCGGACGTGATCCTGATCGGCGAGATCCTGGATGCCACGACGATGGAGGCGG
CGATCGCCTTCGCCGAGACCGGCCACCTGTGCCTGGCCACCCTGCACTCCAACAACGCCGACCAGACCATCGAGCGCATC
CTCAACTTCTTCCCGGAAAGCGCGCACAAGAACGTGCTGATGAACCTGGCGCTGAACCTGCGCGCGGTCATCTCGCAGCG
CCTGGTCAAGGACAAGAACGAGCGCCGCCGCCCGGCCACCGAGGTGCTGCTGAACACGCCGATGATCCGCGACCTGCTGC
GCCGCGGCCAGGTCCACGAGATCAAGGCCGCCATGGAGGAGTCGCTGGAGGAAGGCATGGAGACCTTCGATCAGTGCCTG
TTCCGGATGGTCAAGTCCGGCGAAATCGAGCAGGAGGAAGCGCTGCGCGCGGCCGACTCGCGCGACGGCCTGGCGCTGAA
GTTCCGCCTGTCCGAGGGCTCCAGCGGCGAACACGACCCTTACGCCGACTACGACGGCGGCGCCAGCTCGCCGCGGATCA
CCCACGGCTTCGGCTGA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(47-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilU Pseudomonas stutzeri DSM 10701

50.975

94.974

0.484
  pilU Vibrio cholerae strain A1552

48.238

97.619

0.471
  pilU Acinetobacter baylyi ADP1

49.435

93.651

0.463
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

44.297

99.735

0.442
  pilT Pseudomonas aeruginosa PAK

42.308

89.418

0.378
  pilT Acinetobacter nosocomialis M2

41.124

89.418

0.368
  pilT Acinetobacter baumannii D1279779

41.124

89.418

0.368
  pilT Acinetobacter baumannii strain A118

41.124

89.418

0.368
  pilT Acinetobacter baylyi ADP1

40.294

89.947

0.362

Multiple sequence alignment