Detailed information
Bioinformatically predicted
Overview
| Name | comGC | Type | Machinery gene |
| Locus tag | AB3445_RS02900 | Genome accession | NZ_CP162422 |
| Coordinates | 534133..534444 (+) | Length | 103 a.a. |
| NCBI ID | WP_000472256.1 | Uniprot ID | - |
| Organism | Staphylococcus aureus strain TUM22723 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 529133..539444
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AB3445_RS02870 (AB3445_02870) | - | 529916..530119 (+) | 204 | WP_000087561.1 | YqgQ family protein | - |
| AB3445_RS02875 (AB3445_02875) | - | 530116..531102 (+) | 987 | WP_000161314.1 | ROK family glucokinase | - |
| AB3445_RS02880 (AB3445_02880) | - | 531102..531431 (+) | 330 | WP_001018871.1 | MTH1187 family thiamine-binding protein | - |
| AB3445_RS02885 (AB3445_02885) | - | 531428..532051 (+) | 624 | WP_001223008.1 | MBL fold metallo-hydrolase | - |
| AB3445_RS02890 (AB3445_02890) | comGA | 532103..533077 (+) | 975 | WP_000697228.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| AB3445_RS02895 (AB3445_02895) | comGB | 533049..534119 (+) | 1071 | WP_000775708.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| AB3445_RS02900 (AB3445_02900) | comGC | 534133..534444 (+) | 312 | WP_000472256.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| AB3445_RS02905 (AB3445_02905) | comGD | 534422..534868 (+) | 447 | WP_001790850.1 | competence type IV pilus minor pilin ComGD | Machinery gene |
| AB3445_RS02910 (AB3445_02910) | comGE | 534855..535154 (+) | 300 | WP_000844413.1 | hypothetical protein | Machinery gene |
| AB3445_RS02915 (AB3445_02915) | comGF | 535072..535569 (+) | 498 | WP_001789864.1 | competence type IV pilus minor pilin ComGF | Machinery gene |
| AB3445_RS02920 (AB3445_02920) | - | 535666..535812 (+) | 147 | WP_001789879.1 | hypothetical protein | - |
| AB3445_RS02925 (AB3445_02925) | - | 535802..536326 (+) | 525 | WP_001015117.1 | shikimate kinase | - |
| AB3445_RS02930 (AB3445_02930) | gcvT | 536485..537576 (+) | 1092 | WP_053872994.1 | glycine cleavage system aminomethyltransferase GcvT | - |
| AB3445_RS02935 (AB3445_02935) | gcvPA | 537596..538942 (+) | 1347 | WP_000019687.1 | aminomethyl-transferring glycine dehydrogenase subunit GcvPA | - |
Sequence
Protein
Download Length: 103 a.a. Molecular weight: 11315.36 Da Isoelectric Point: 8.5268
>NTDB_id=1025198 AB3445_RS02900 WP_000472256.1 534133..534444(+) (comGC) [Staphylococcus aureus strain TUM22723]
MFKFLKKTQAFTLIEMLLVLLIISLLLILIIPNIAKQTAHIQSTGCNAQVKMVNSQIEAYALKHNRNPSSIEDLIADGFI
KEAQKTCKSGETITISNGEAVAN
MFKFLKKTQAFTLIEMLLVLLIISLLLILIIPNIAKQTAHIQSTGCNAQVKMVNSQIEAYALKHNRNPSSIEDLIADGFI
KEAQKTCKSGETITISNGEAVAN
Nucleotide
Download Length: 312 bp
>NTDB_id=1025198 AB3445_RS02900 WP_000472256.1 534133..534444(+) (comGC) [Staphylococcus aureus strain TUM22723]
ATGTTTAAATTTCTTAAGAAAACTCAAGCGTTTACATTGATAGAGATGCTATTAGTGTTATTAATCATCAGTTTATTATT
AATTTTAATCATTCCAAATATTGCTAAACAAACTGCTCACATACAATCAACAGGTTGTAATGCACAGGTAAAAATGGTTA
ATAGTCAAATTGAAGCGTATGCATTGAAACATAATAGAAATCCATCGTCTATTGAAGACTTAATTGCAGATGGTTTTATA
AAAGAAGCACAAAAGACATGTAAATCAGGAGAGACAATCACAATTAGTAATGGAGAAGCAGTTGCAAATTAG
ATGTTTAAATTTCTTAAGAAAACTCAAGCGTTTACATTGATAGAGATGCTATTAGTGTTATTAATCATCAGTTTATTATT
AATTTTAATCATTCCAAATATTGCTAAACAAACTGCTCACATACAATCAACAGGTTGTAATGCACAGGTAAAAATGGTTA
ATAGTCAAATTGAAGCGTATGCATTGAAACATAATAGAAATCCATCGTCTATTGAAGACTTAATTGCAGATGGTTTTATA
AAAGAAGCACAAAAGACATGTAAATCAGGAGAGACAATCACAATTAGTAATGGAGAAGCAGTTGCAAATTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGC | Staphylococcus aureus MW2 |
100 |
100 |
1 |
| comGC | Staphylococcus aureus N315 |
100 |
100 |
1 |
| comGC/cglC | Streptococcus pneumoniae TIGR4 |
46.078 |
99.029 |
0.456 |
| comGC/cglC | Streptococcus pneumoniae Rx1 |
46.078 |
99.029 |
0.456 |
| comGC/cglC | Streptococcus pneumoniae D39 |
46.078 |
99.029 |
0.456 |
| comGC/cglC | Streptococcus pneumoniae R6 |
46.078 |
99.029 |
0.456 |
| comGC/cglC | Streptococcus mitis SK321 |
51.163 |
83.495 |
0.427 |
| comGC/cglC | Streptococcus mitis NCTC 12261 |
51.163 |
83.495 |
0.427 |
| comYC | Streptococcus gordonii str. Challis substr. CH1 |
42.857 |
95.146 |
0.408 |
| comYC | Streptococcus suis isolate S10 |
50 |
75.728 |
0.379 |
| comGC | Bacillus subtilis subsp. subtilis str. 168 |
41.758 |
88.35 |
0.369 |
| comGC | Lactococcus lactis subsp. cremoris KW2 |
46.341 |
79.612 |
0.369 |