Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   AB3G31_RS04345 Genome accession   NZ_CP162006
Coordinates   894613..895830 (-) Length   405 a.a.
NCBI ID   WP_367848982.1    Uniprot ID   -
Organism   Rhodoferax sp. WC2427     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 889613..900830
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3G31_RS04315 (AB3G31_04315) - 890723..891601 (+) 879 WP_367848976.1 ATP-binding protein -
  AB3G31_RS04320 (AB3G31_04320) - 891598..892065 (+) 468 WP_367848977.1 NUDIX domain-containing protein -
  AB3G31_RS04325 (AB3G31_04325) - 892117..892317 (-) 201 WP_367848978.1 DNA gyrase inhibitor YacG -
  AB3G31_RS04330 (AB3G31_04330) zapD 892375..893130 (-) 756 WP_367848979.1 cell division protein ZapD -
  AB3G31_RS04335 (AB3G31_04335) coaE 893152..893694 (-) 543 WP_367848980.1 dephospho-CoA kinase -
  AB3G31_RS04340 (AB3G31_04340) pilD 893765..894604 (-) 840 WP_367848981.1 A24 family peptidase Machinery gene
  AB3G31_RS04345 (AB3G31_04345) pilC 894613..895830 (-) 1218 WP_367848982.1 type II secretion system F family protein Machinery gene
  AB3G31_RS04350 (AB3G31_04350) pilB 895864..897597 (-) 1734 WP_367848983.1 type IV-A pilus assembly ATPase PilB Machinery gene
  AB3G31_RS04355 (AB3G31_04355) - 897638..898630 (-) 993 WP_367848984.1 RluA family pseudouridine synthase -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44262.02 Da        Isoelectric Point: 9.4229

>NTDB_id=1023448 AB3G31_RS04345 WP_367848982.1 894613..895830(-) (pilC) [Rhodoferax sp. WC2427]
MATAASSTIKEFVFEWEGKDRNGKQVRGETRASGENQVTASLRRQGVFPTKIKKRRMRSGKSIKPKDIAIFTRQLATMMK
AGVPLLQAFDIVGRGNANASVTKLLNDIRQDVETGSSLSAAFRKFPLYFNSLYCNLVEAGEAAGILEALLDRLAVYMEKT
EAIKSKIKSALMYPISVVVVAFVVVAVIMIFVIPAFKEVFSSFGADLPAPTLFIIAVSEIFVRYWWLIFGGIGGGLYFFM
QAWQRNIKMQQVMDRIMLKLPVFGVLVEKSCIARWTRTLSTMFAAGVPLVEALDSVGGASGNSVFELATDRIQQEVSTGT
SLTTAMGNAKIFPSMVLQMCSIGEESGSIDHMLGKAADFYEAEVDDMVAGLSSLMEPIIIVFLGTIIGGIVVSMYLPIFK
LGQVV

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=1023448 AB3G31_RS04345 WP_367848982.1 894613..895830(-) (pilC) [Rhodoferax sp. WC2427]
ATGGCAACAGCCGCGTCCAGCACAATCAAAGAATTCGTCTTCGAATGGGAAGGCAAGGACCGCAACGGCAAGCAGGTTCG
TGGCGAGACACGCGCATCGGGCGAAAACCAGGTCACTGCGTCGCTGCGCCGCCAAGGGGTGTTTCCGACCAAAATTAAAA
AGCGCCGCATGCGCTCGGGCAAGAGCATCAAGCCCAAGGACATCGCCATCTTCACCCGCCAGCTGGCCACCATGATGAAG
GCCGGTGTGCCCTTGCTGCAAGCGTTTGACATTGTGGGCCGCGGCAATGCCAATGCCAGCGTCACCAAGCTGCTCAACGA
CATCCGCCAGGACGTGGAGACCGGTAGCTCACTGAGCGCGGCCTTCCGCAAATTTCCGCTGTACTTCAATAGCCTGTACT
GCAACCTGGTCGAAGCGGGTGAAGCCGCCGGTATCCTGGAAGCCCTGCTGGACCGCCTGGCCGTCTACATGGAGAAGACC
GAAGCCATCAAGTCCAAGATCAAATCGGCCCTGATGTACCCCATCTCCGTGGTGGTGGTGGCGTTTGTGGTGGTGGCAGT
CATCATGATCTTTGTGATTCCGGCGTTCAAGGAAGTGTTCAGCAGCTTCGGTGCCGACCTGCCTGCGCCCACGCTGTTCA
TCATTGCAGTGAGTGAAATTTTCGTCAGGTATTGGTGGCTGATCTTTGGCGGCATTGGCGGCGGGCTTTACTTTTTCATG
CAGGCCTGGCAACGCAACATCAAGATGCAGCAGGTCATGGACCGCATCATGCTGAAATTGCCGGTGTTTGGTGTACTGGT
CGAAAAGTCCTGCATCGCCCGCTGGACGCGCACCCTGTCCACCATGTTTGCCGCCGGTGTCCCACTGGTGGAGGCGTTGG
ATTCCGTGGGTGGCGCTTCGGGCAATTCGGTGTTCGAGCTCGCCACCGACCGTATCCAGCAAGAGGTGTCTACCGGCACC
AGCCTGACCACGGCCATGGGCAACGCCAAGATCTTTCCGTCCATGGTGCTGCAAATGTGCTCCATCGGCGAAGAATCCGG
CTCCATCGACCACATGCTGGGCAAGGCGGCAGACTTTTACGAGGCCGAGGTGGACGACATGGTGGCGGGCTTGTCCAGCC
TGATGGAGCCCATCATCATCGTGTTTCTGGGCACCATCATCGGCGGCATCGTGGTGTCGATGTACCTGCCGATCTTCAAG
CTGGGCCAAGTCGTCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)

Type II secretion system (T2SS), protein F (T2SSF)

(275-397)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

53.218

99.753

0.531
  pilG Neisseria gonorrhoeae MS11

52.02

97.778

0.509
  pilG Neisseria meningitidis 44/76-A

51.768

97.778

0.506
  pilC Legionella pneumophila strain ERS1305867

50.503

98.272

0.496
  pilC Acinetobacter baylyi ADP1

47.666

100

0.479
  pilC Acinetobacter baumannii D1279779

47.355

98.025

0.464
  pilC Vibrio cholerae strain A1552

40.64

100

0.407
  pilC Thermus thermophilus HB27

38.614

99.753

0.385
  pilC Vibrio campbellii strain DS40M4

38.06

99.259

0.378

Multiple sequence alignment