Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   AB2N10_RS10625 Genome accession   NZ_CP160906
Coordinates   2325971..2327203 (-) Length   410 a.a.
NCBI ID   WP_369433828.1    Uniprot ID   -
Organism   Psychromonas sp. MME1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2320971..2332203
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB2N10_RS10610 nagB 2322630..2323430 (+) 801 WP_354623553.1 glucosamine-6-phosphate deaminase -
  AB2N10_RS10615 nagA 2323470..2324612 (+) 1143 WP_354623555.1 N-acetylglucosamine-6-phosphate deacetylase -
  AB2N10_RS10620 - 2324677..2325906 (+) 1230 WP_354623556.1 ROK family transcriptional regulator -
  AB2N10_RS10625 pilC 2325971..2327203 (-) 1233 WP_369433828.1 type II secretion system F family protein Machinery gene
  AB2N10_RS10630 pilB 2327322..2329010 (-) 1689 WP_354623558.1 type IV-A pilus assembly ATPase PilB Machinery gene
  AB2N10_RS10635 - 2329017..2329427 (-) 411 WP_354623559.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  AB2N10_RS10640 - 2329929..2330078 (-) 150 WP_354623560.1 hypothetical protein -
  AB2N10_RS10645 nhaD 2330079..2331521 (-) 1443 WP_354623561.1 sodium:proton antiporter NhaD -
  AB2N10_RS10650 - 2331640..2332002 (-) 363 WP_354623562.1 VanZ family protein -

Sequence

Protein


Download         Length: 410 a.a.        Molecular weight: 44206.89 Da        Isoelectric Point: 9.0141

>NTDB_id=1022233 AB2N10_RS10625 WP_369433828.1 2325971..2327203(-) (pilC) [Psychromonas sp. MME1]
MAAPKKPQAVVIHSFKWKGFNRKGGKVSGEIQSASLVEAKAELRQQGVNVTRITKKPKDLFSFGNKISPMDIAIVSRQIA
TMLGAGVPLVQSLQLIAKSNEKASLRELMTSIATEVATGTPLSKTLRTHPKYFDDLYCDLVDAGEESGALEAIYDRIATY
KEKSEALKSKIKKAMFYPAAVLAVAGVVTMLLLLFVIPQFQDIFTGFGAELPAFTLFVLGISDLVQSYWYIIAAAVIAAI
FIFKRAHAASQNVRDNTDKFVLKIPVISTILDKAAVARFARTLSTTFSAGIPLVDALISAAGASGNYVYRSAITNIRTEV
MAGMQMNVAMKTTTVFPDMVAQMVMIGEESGDLDGMLSKVADIYEQQVDDAVDALTSLLEPMIMVVLGVVVGGLIVAMYL
PIFQLGSVIG

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=1022233 AB2N10_RS10625 WP_369433828.1 2325971..2327203(-) (pilC) [Psychromonas sp. MME1]
ATGGCTGCACCTAAAAAACCTCAAGCTGTTGTTATTCATAGCTTTAAATGGAAGGGGTTTAACCGCAAGGGCGGAAAAGT
CTCTGGCGAGATACAAAGTGCTTCGTTAGTGGAAGCCAAGGCGGAACTGCGTCAACAGGGGGTAAATGTTACCCGCATCA
CCAAAAAACCAAAAGATCTCTTCTCCTTTGGCAATAAAATATCGCCAATGGATATCGCCATTGTTTCACGACAAATAGCG
ACCATGCTAGGTGCTGGTGTGCCCTTAGTACAGAGCCTACAGTTAATTGCTAAAAGTAATGAAAAAGCGTCCTTACGGGA
ACTGATGACCTCCATTGCCACGGAAGTAGCGACGGGTACACCGCTCTCTAAAACCCTGCGTACGCATCCTAAGTATTTTG
ATGATCTCTACTGCGATTTGGTGGATGCTGGTGAAGAGTCGGGTGCCTTAGAGGCGATTTATGATCGTATTGCCACCTAT
AAAGAGAAGTCTGAAGCGCTGAAGTCGAAAATTAAAAAGGCGATGTTTTATCCTGCTGCGGTATTGGCTGTTGCAGGGGT
GGTGACGATGTTGCTACTACTATTTGTTATTCCGCAGTTCCAAGATATTTTTACCGGTTTTGGTGCCGAACTCCCAGCCT
TTACCCTGTTTGTATTGGGCATCTCCGATTTAGTACAATCTTATTGGTACATTATCGCTGCGGCGGTGATAGCGGCCATT
TTTATATTTAAACGCGCCCATGCCGCCTCGCAGAATGTACGCGATAATACCGATAAATTCGTGCTTAAAATTCCCGTCAT
TAGCACCATTTTAGATAAAGCCGCCGTGGCCCGCTTTGCGCGCACGCTATCGACCACCTTTTCTGCCGGTATCCCGTTAG
TGGATGCCTTAATTTCTGCCGCAGGGGCATCGGGTAACTATGTTTATCGTAGTGCGATTACCAATATTCGTACCGAGGTA
ATGGCGGGGATGCAGATGAATGTGGCGATGAAAACGACCACTGTTTTTCCTGATATGGTTGCACAAATGGTGATGATTGG
TGAGGAATCCGGTGACCTTGACGGCATGCTAAGTAAAGTGGCGGATATCTATGAGCAGCAAGTTGATGACGCCGTTGACG
CTTTAACAAGCCTATTAGAGCCGATGATCATGGTGGTGTTAGGTGTGGTCGTTGGTGGTTTGATTGTGGCGATGTATCTG
CCTATCTTCCAATTGGGTAGTGTTATTGGTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(279-401)

Type II secretion system (T2SS), protein F (T2SSF)

(76-198)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

57.215

96.341

0.551
  pilC Legionella pneumophila strain ERS1305867

52.897

96.829

0.512
  pilC Acinetobacter baylyi ADP1

49.878

99.756

0.498
  pilC Acinetobacter baumannii D1279779

50.248

98.537

0.495
  pilC Vibrio cholerae strain A1552

46.929

99.268

0.466
  pilC Vibrio campbellii strain DS40M4

46.078

99.512

0.459
  pilG Neisseria meningitidis 44/76-A

42.037

93.415

0.393
  pilG Neisseria gonorrhoeae MS11

42.037

93.415

0.393
  pilC Thermus thermophilus HB27

38.095

97.317

0.371

Multiple sequence alignment