Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   AB1S68_RS16950 Genome accession   NZ_CP160473
Coordinates   4192584..4193801 (+) Length   405 a.a.
NCBI ID   WP_280945979.1    Uniprot ID   -
Organism   Saccharophagus degradans strain HMH0024     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4187584..4198801
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB1S68_RS16935 (AB1S68_16930) - 4188067..4189995 (-) 1929 WP_280945976.1 hypothetical protein -
  AB1S68_RS16940 (AB1S68_16935) - 4190061..4190492 (-) 432 WP_280945977.1 pilin -
  AB1S68_RS16945 (AB1S68_16940) pilB 4190850..4192580 (+) 1731 WP_280945978.1 type IV-A pilus assembly ATPase PilB Machinery gene
  AB1S68_RS16950 (AB1S68_16945) pilC 4192584..4193801 (+) 1218 WP_280945979.1 type II secretion system F family protein Machinery gene
  AB1S68_RS16955 (AB1S68_16950) pilD 4193801..4194700 (+) 900 WP_280945980.1 prepilin peptidase Machinery gene
  AB1S68_RS16960 (AB1S68_16955) coaE 4194700..4195311 (+) 612 WP_280945981.1 dephospho-CoA kinase -
  AB1S68_RS16965 (AB1S68_16960) - 4195316..4195528 (+) 213 WP_011467342.1 DNA gyrase inhibitor YacG -
  AB1S68_RS16970 (AB1S68_16965) - 4195525..4196514 (-) 990 WP_280945982.1 Nudix family hydrolase -
  AB1S68_RS16975 (AB1S68_16970) argJ 4196495..4197715 (-) 1221 WP_280945983.1 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 43458.99 Da        Isoelectric Point: 9.5451

>NTDB_id=1021446 AB1S68_RS16950 WP_280945979.1 4192584..4193801(+) (pilC) [Saccharophagus degradans strain HMH0024]
MASASSTDVFVYKGVDKKGNKVEGQISTNSSAMAKAQLIKQGIRAKSVRKKPKPLFGGGGKPIKPMDIALFTRQMATMMK
AGVPLVQSFEIVADGSENKTLADLIRQIKDDVASGNGFAPSLRKHPKYFDDLFCNLVESGEQSGALETMLDRIATYKEKT
EQLKAKIKKALTYPIAVVVVALVVSIILLIKVVPTFAETFSSFGADLPAFTQFVLHLSDLAQAYWLYMIGIIVGTLVGFS
KAKQKSPAFAAAIDRISLKLPIVGNIIYQSIMARFGRTLSTTFAAGVPLIDALQSVAGATGNSVYTEAVLKIKDEVSTGT
QLNTSLTNSGKFPALLIQMTAIGEESGALDTMLDKVATYYEEAVDNLVDNLTSLLEPLIMSVLGVLVGGMMIAMYLPIFM
MGQAV

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=1021446 AB1S68_RS16950 WP_280945979.1 4192584..4193801(+) (pilC) [Saccharophagus degradans strain HMH0024]
ATGGCTAGCGCATCCTCAACAGACGTATTCGTATATAAGGGAGTGGATAAAAAAGGCAATAAGGTTGAAGGCCAGATATC
CACTAACTCTTCTGCTATGGCCAAGGCCCAGCTTATTAAGCAAGGCATTCGCGCCAAGAGTGTACGCAAAAAGCCCAAAC
CTCTGTTTGGTGGTGGCGGCAAGCCAATCAAACCAATGGATATCGCCTTGTTCACTCGCCAAATGGCAACCATGATGAAA
GCGGGTGTACCTCTAGTACAAAGCTTTGAAATTGTAGCAGACGGCTCCGAAAATAAAACACTGGCAGATCTTATTCGCCA
AATCAAAGACGATGTTGCTTCAGGTAATGGCTTTGCACCATCTCTACGTAAACACCCAAAGTACTTTGATGATTTATTTT
GTAATCTTGTCGAATCAGGTGAGCAATCTGGTGCGCTAGAAACGATGCTCGACCGAATAGCTACCTATAAAGAAAAAACT
GAACAGCTTAAAGCCAAAATCAAAAAAGCGTTAACCTACCCCATTGCAGTAGTGGTTGTAGCGCTTGTTGTTTCGATTAT
TCTTTTAATTAAAGTAGTACCAACATTCGCCGAAACATTCTCTTCATTTGGCGCAGACCTACCCGCGTTCACCCAATTCG
TATTGCATCTTTCGGATCTTGCTCAAGCTTATTGGCTGTACATGATAGGTATAATTGTCGGCACCCTCGTAGGTTTCTCA
AAGGCAAAACAAAAAAGTCCCGCTTTCGCTGCCGCCATTGATCGTATATCCCTCAAGCTTCCCATTGTTGGAAATATTAT
TTACCAATCTATTATGGCTCGCTTTGGCCGCACACTCTCAACAACTTTCGCGGCAGGTGTACCACTAATTGACGCCCTTC
AATCTGTTGCAGGGGCGACTGGCAATTCTGTTTATACTGAAGCTGTTTTAAAAATAAAGGATGAGGTATCAACGGGCACT
CAGCTAAACACCTCTCTAACTAACTCAGGCAAATTCCCCGCACTCTTAATTCAAATGACTGCCATCGGTGAGGAGTCAGG
CGCCTTAGATACAATGCTGGATAAAGTAGCAACCTACTACGAAGAAGCGGTAGATAACCTTGTGGACAACCTTACATCGT
TACTCGAGCCACTTATTATGTCTGTGTTGGGCGTACTTGTTGGCGGCATGATGATAGCTATGTACCTTCCTATATTCATG
ATGGGTCAGGCGGTTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(277-397)

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

61.94

99.259

0.615
  pilC Acinetobacter baylyi ADP1

60.05

98.272

0.59
  pilC Acinetobacter baumannii D1279779

58.69

98.025

0.575
  pilC Legionella pneumophila strain ERS1305867

57.323

97.778

0.56
  pilG Neisseria gonorrhoeae MS11

40.955

98.272

0.402
  pilG Neisseria meningitidis 44/76-A

40.704

98.272

0.4
  pilC Vibrio cholerae strain A1552

41.538

96.296

0.4
  pilC Vibrio campbellii strain DS40M4

40.153

96.543

0.388
  pilC Thermus thermophilus HB27

37.811

99.259

0.375

Multiple sequence alignment