Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   ABZP31_RS13590 Genome accession   NZ_CP160437
Coordinates   2887722..2889902 (-) Length   726 a.a.
NCBI ID   WP_005405252.1    Uniprot ID   -
Organism   Acinetobacter sp. FL     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2882722..2894902
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABZP31_RS13575 (ABZP31_13575) - 2885159..2886022 (-) 864 WP_248133745.1 hypothetical protein -
  ABZP31_RS13580 (ABZP31_13580) aroB 2886030..2887115 (-) 1086 WP_005405251.1 3-dehydroquinate synthase -
  ABZP31_RS13585 (ABZP31_13585) aroK 2887134..2887685 (-) 552 WP_005018052.1 shikimate kinase AroK -
  ABZP31_RS13590 (ABZP31_13590) pilQ 2887722..2889902 (-) 2181 WP_005405252.1 type IV pilus secretin PilQ Machinery gene
  ABZP31_RS13595 (ABZP31_13595) pilP 2889920..2890447 (-) 528 WP_005018049.1 pilus assembly protein PilP Machinery gene
  ABZP31_RS13600 (ABZP31_13600) comO 2890444..2891154 (-) 711 WP_111282513.1 type 4a pilus biogenesis protein PilO Machinery gene
  ABZP31_RS13605 (ABZP31_13605) pilN 2891151..2891810 (-) 660 WP_139880691.1 PilN domain-containing protein Machinery gene
  ABZP31_RS13610 (ABZP31_13610) comM 2891810..2892868 (-) 1059 WP_119879669.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 726 a.a.        Molecular weight: 78722.38 Da        Isoelectric Point: 5.6816

>NTDB_id=1021142 ABZP31_RS13590 WP_005405252.1 2887722..2889902(-) (pilQ) [Acinetobacter sp. FL]
MKKSFQEFLMGDGNSMIHLYRQFAMGAVAAAMMQVVSAAVNITNIVPMQIPGQGTEIRVIFNGLPPQPQAYQLEQPSRLI
LDFDQAKQNLKQPSIPVATNEASAIHVASDEQRSRIIVSLKDAGAFTTRVEGNTFILKINPVTGAPTVLPQPVAVAQQPA
QGISNIGFQRGSQGEGQVLIDFLNPNTPADVQQQGSKVIVRMLGNKIPSHLIRRLNMNDFATPVSTVDAYNEGGNGIITI
QSTGSYEYMAYQTENRLTVSLKRPEEKSTVKTRSAPNYSGKKVSLDFQDIEVRRVLQLLADFTGINLVAADSVQGNITLR
LKDVPWDQALDIILKTKNLDKRRNGDVIWIAPVAELIKAEEEEAKAIAQSTRLMPLQTEYIQLNYAKAVDIEKLITQGRN
SGNGSANGASNNTEALGDSVGSLLSPRGTISIDPRTNTLIINDTAQKLDQIRRMIDLLDVAVKQVMVEARIVRASTDFTK
EMGVKWGILSQGITRNNSLLVGGSETTLWNLRDPDDDGKYTIERPQNLNVDLGVTASGASRIAFGLISLSDFMLDLELSA
LQADGYGEVISTPKVLTADKQQARVASGTQIPYQSSEGGGANAVSTTEFVDATLSLNVTPSITPDGKIQMLLNITSDTPG
NPTPTGQIAINKNEINTNVLVNNGETVVLGGIFEQETRNTQTKVPVLGDLPGVGRLFRRDAKSNNKRELLIFVTPRIVND
SATGNH

Nucleotide


Download         Length: 2181 bp        

>NTDB_id=1021142 ABZP31_RS13590 WP_005405252.1 2887722..2889902(-) (pilQ) [Acinetobacter sp. FL]
ATGAAAAAGAGTTTTCAAGAATTTTTGATGGGGGATGGCAACAGCATGATTCATTTATATCGTCAATTTGCGATGGGAGC
AGTTGCTGCAGCAATGATGCAGGTGGTAAGTGCAGCGGTCAATATTACCAATATTGTACCTATGCAGATTCCGGGACAAG
GGACAGAAATTCGAGTCATATTTAATGGATTGCCACCCCAGCCCCAGGCTTATCAGCTTGAACAGCCTTCGCGACTGATC
TTAGACTTTGATCAGGCCAAGCAAAATCTTAAACAGCCTAGTATTCCGGTTGCTACCAATGAAGCAAGCGCAATTCATGT
GGCCTCTGATGAACAACGTTCCCGAATTATTGTAAGTTTAAAAGATGCAGGTGCCTTTACTACCCGTGTAGAAGGCAATA
CTTTTATTTTAAAGATTAATCCGGTAACAGGCGCGCCTACAGTATTGCCTCAGCCAGTTGCTGTAGCACAGCAGCCTGCT
CAGGGTATCTCGAACATTGGTTTCCAGCGTGGAAGTCAGGGCGAGGGACAGGTTTTAATTGATTTTCTGAACCCGAATAC
TCCTGCTGATGTACAGCAGCAGGGAAGTAAAGTCATAGTCAGGATGCTGGGAAATAAAATCCCTTCCCATCTGATCCGCC
GCTTGAATATGAATGATTTTGCCACGCCGGTCTCGACTGTTGATGCCTATAATGAAGGCGGTAATGGTATTATTACTATT
CAATCAACTGGCAGTTATGAATATATGGCGTACCAGACTGAGAACCGCTTAACAGTCAGTTTAAAGCGCCCGGAAGAAAA
GAGTACGGTCAAAACCCGTTCTGCACCTAATTATAGTGGTAAAAAGGTTTCACTCGACTTTCAGGATATTGAAGTTCGTC
GGGTATTACAGTTGTTAGCAGATTTCACTGGTATCAACCTGGTTGCAGCCGACTCTGTTCAGGGAAATATTACGTTGCGC
CTGAAAGATGTACCATGGGACCAGGCTTTAGACATTATTTTAAAAACCAAAAACCTGGATAAACGTCGTAATGGTGATGT
AATCTGGATTGCTCCGGTTGCAGAGCTGATTAAAGCAGAAGAGGAAGAAGCTAAGGCGATTGCGCAAAGTACCAGACTTA
TGCCTTTACAAACTGAATATATCCAGCTGAATTATGCAAAAGCTGTCGATATCGAAAAATTGATTACCCAAGGCAGAAAT
AGTGGTAATGGTAGTGCTAACGGTGCTTCAAACAATACGGAGGCACTGGGTGATAGCGTGGGAAGCCTGCTGAGTCCAAG
AGGAACCATTTCAATAGACCCACGTACCAATACCTTAATCATTAATGATACTGCTCAGAAACTTGACCAGATCCGCCGTA
TGATTGATCTTCTGGATGTAGCTGTAAAACAGGTGATGGTTGAAGCCCGTATTGTCAGGGCTAGTACTGACTTCACCAAA
GAAATGGGCGTGAAGTGGGGAATTCTTTCACAGGGTATTACCCGTAATAACAGCCTGCTGGTCGGCGGCAGTGAAACTAC
CTTATGGAATCTGCGTGATCCTGATGACGATGGTAAATACACCATAGAGCGACCACAAAACCTGAATGTGGATTTAGGCG
TTACAGCATCGGGTGCAAGCCGTATTGCCTTCGGTTTAATTAGTCTTTCTGATTTTATGCTGGATCTCGAATTGTCAGCC
TTGCAGGCTGATGGTTATGGTGAAGTCATTTCTACGCCGAAAGTACTAACAGCTGACAAACAGCAGGCCCGAGTTGCTTC
TGGTACCCAAATTCCCTACCAGTCTTCAGAGGGCGGTGGCGCCAATGCAGTCTCTACCACTGAATTTGTGGATGCTACTT
TAAGTCTGAATGTAACACCCAGTATTACCCCTGATGGTAAAATCCAGATGTTGCTGAACATTACCAGCGATACTCCGGGG
AACCCGACACCAACTGGCCAGATCGCGATTAACAAGAATGAAATTAATACTAATGTGCTGGTTAACAATGGTGAAACTGT
AGTCCTTGGCGGTATTTTTGAACAGGAAACCAGGAATACGCAAACGAAAGTACCTGTTCTCGGAGACCTGCCGGGTGTAG
GCCGTTTATTCCGCCGTGATGCTAAAAGTAATAACAAGCGTGAGTTACTGATTTTTGTCACACCACGAATTGTTAATGAC
AGTGCGACTGGAAATCATTAA

Domains

Predicted by InterproScan.

Secretin and TonB N terminus short domain (STN)

(307-352)

Bacterial type II/III secretion system short domain (Secretin_N)

(379-464)

Bacterial type II and III secretion system protein (Secretin)

(560-718)

AMIN domain (AMIN)

(56-136)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii D1279779

72.727

100

0.727
  pilQ Acinetobacter baumannii strain A118

72.59

100

0.726
  comQ Acinetobacter baylyi ADP1

72.791

98.209

0.715
  pilQ Pseudomonas aeruginosa PAK

39.643

100

0.398
  pilQ Legionella pneumophila strain Lp02

38.384

95.455

0.366
  pilQ Legionella pneumophila strain ERS1305867

38.273

95.73

0.366

Multiple sequence alignment