Detailed information    

insolico Bioinformatically predicted

Overview

Name   comO   Type   Machinery gene
Locus tag   ABZP31_RS13600 Genome accession   NZ_CP160437
Coordinates   2890444..2891154 (-) Length   236 a.a.
NCBI ID   WP_111282513.1    Uniprot ID   -
Organism   Acinetobacter sp. FL     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2885444..2896154
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABZP31_RS13580 (ABZP31_13580) aroB 2886030..2887115 (-) 1086 WP_005405251.1 3-dehydroquinate synthase -
  ABZP31_RS13585 (ABZP31_13585) aroK 2887134..2887685 (-) 552 WP_005018052.1 shikimate kinase AroK -
  ABZP31_RS13590 (ABZP31_13590) pilQ 2887722..2889902 (-) 2181 WP_005405252.1 type IV pilus secretin PilQ Machinery gene
  ABZP31_RS13595 (ABZP31_13595) pilP 2889920..2890447 (-) 528 WP_005018049.1 pilus assembly protein PilP Machinery gene
  ABZP31_RS13600 (ABZP31_13600) comO 2890444..2891154 (-) 711 WP_111282513.1 type 4a pilus biogenesis protein PilO Machinery gene
  ABZP31_RS13605 (ABZP31_13605) pilN 2891151..2891810 (-) 660 WP_139880691.1 PilN domain-containing protein Machinery gene
  ABZP31_RS13610 (ABZP31_13610) comM 2891810..2892868 (-) 1059 WP_119879669.1 pilus assembly protein PilM Machinery gene
  ABZP31_RS13615 (ABZP31_13615) ponA 2893029..2895575 (+) 2547 WP_262475134.1 penicillin-binding protein PBP1a -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 26932.21 Da        Isoelectric Point: 4.4700

>NTDB_id=1021144 ABZP31_RS13600 WP_111282513.1 2890444..2891154(-) (comO) [Acinetobacter sp. FL]
MSREEFDDLNQEDAKPAKRKMTLEAFLQQFNTLDTHNYGSWPFSVKLTCWVFLFLLVCAIGYFLAIRPKLEAISNAQAQE
QNLLNEFREKDSKLRNLQQYQAQLQEMEANFNEQLEQLPKETEIPGLVEDINVAGVSSGLKFKNIRLESEIRQEFFIEQP
IDIQATGDYHAFGSFVSTIAALPRIVTLHDFEITSTQAQNSDIPEVNYAVKAKTYRYVGNNEQPNTTDTPAGGQPQ

Nucleotide


Download         Length: 711 bp        

>NTDB_id=1021144 ABZP31_RS13600 WP_111282513.1 2890444..2891154(-) (comO) [Acinetobacter sp. FL]
ATGAGTCGTGAAGAATTTGATGATTTAAACCAGGAAGATGCTAAACCTGCTAAAAGAAAAATGACGCTAGAAGCCTTCCT
GCAACAGTTTAATACTCTGGATACACATAATTACGGCAGCTGGCCTTTTTCAGTCAAACTGACCTGCTGGGTATTTCTGT
TTCTGCTGGTTTGTGCAATTGGCTATTTTTTAGCAATTCGCCCCAAACTTGAAGCTATTTCTAATGCGCAGGCACAAGAA
CAGAATCTGTTAAACGAGTTTCGTGAAAAGGACTCTAAACTGCGTAACTTACAGCAATACCAGGCACAACTACAGGAAAT
GGAAGCGAATTTTAATGAGCAACTGGAACAGTTGCCTAAAGAAACCGAGATTCCTGGACTGGTTGAAGATATTAACGTTG
CAGGAGTAAGTTCTGGCCTGAAATTTAAAAATATTCGTCTGGAAAGTGAAATTCGGCAGGAATTCTTTATTGAACAGCCA
ATTGATATTCAGGCAACAGGTGATTATCATGCCTTTGGTTCTTTTGTGAGCACTATTGCGGCGCTTCCACGAATTGTAAC
CCTGCATGACTTTGAAATTACCAGTACACAGGCGCAGAACTCAGATATTCCAGAAGTAAATTATGCGGTGAAAGCTAAAA
CATACCGATATGTCGGTAATAATGAGCAGCCAAATACTACGGATACCCCAGCAGGAGGGCAGCCACAATGA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(74-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comO Acinetobacter baylyi ADP1

67.347

100

0.699
  pilO Acinetobacter baumannii D1279779

71.493

93.644

0.669

Multiple sequence alignment