Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   ABZP31_RS13605 Genome accession   NZ_CP160437
Coordinates   2891151..2891810 (-) Length   219 a.a.
NCBI ID   WP_139880691.1    Uniprot ID   A0A8H2JYR1
Organism   Acinetobacter sp. FL     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2886151..2896810
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABZP31_RS13585 (ABZP31_13585) aroK 2887134..2887685 (-) 552 WP_005018052.1 shikimate kinase AroK -
  ABZP31_RS13590 (ABZP31_13590) pilQ 2887722..2889902 (-) 2181 WP_005405252.1 type IV pilus secretin PilQ Machinery gene
  ABZP31_RS13595 (ABZP31_13595) pilP 2889920..2890447 (-) 528 WP_005018049.1 pilus assembly protein PilP Machinery gene
  ABZP31_RS13600 (ABZP31_13600) comO 2890444..2891154 (-) 711 WP_111282513.1 type 4a pilus biogenesis protein PilO Machinery gene
  ABZP31_RS13605 (ABZP31_13605) pilN 2891151..2891810 (-) 660 WP_139880691.1 PilN domain-containing protein Machinery gene
  ABZP31_RS13610 (ABZP31_13610) comM 2891810..2892868 (-) 1059 WP_119879669.1 pilus assembly protein PilM Machinery gene
  ABZP31_RS13615 (ABZP31_13615) ponA 2893029..2895575 (+) 2547 WP_262475134.1 penicillin-binding protein PBP1a -
  ABZP31_RS13620 (ABZP31_13620) - 2895622..2896428 (-) 807 WP_248133747.1 putative RNA methyltransferase -

Sequence

Protein


Download         Length: 219 a.a.        Molecular weight: 24242.61 Da        Isoelectric Point: 4.6921

>NTDB_id=1021145 ABZP31_RS13605 WP_139880691.1 2891151..2891810(-) (pilN) [Acinetobacter sp. FL]
MTTINLLPWRDELREQRKKQFIIICIGVALLGLAGVVLTWMYYDRKLDDQEQANQLIISTNQNLDIQLKSLDGLQEQRDA
IIERMNLIQGLQGKRPVTVRLVDELARVIPANMYLTKFARTGDKFTLEGKAESPNTVAELLRGLEASPWYRNAFMNSFLA
AEEKKEQNPTSLIPRPEENYGSFVVTVDAGEIAADSPPSADPNAPTNTAATGPAAGAAQ

Nucleotide


Download         Length: 660 bp        

>NTDB_id=1021145 ABZP31_RS13605 WP_139880691.1 2891151..2891810(-) (pilN) [Acinetobacter sp. FL]
ATGACAACAATTAACCTGCTCCCTTGGCGTGATGAGCTAAGGGAACAACGGAAAAAGCAATTTATTATTATTTGTATTGG
GGTAGCATTACTAGGTTTAGCCGGAGTGGTACTGACCTGGATGTACTATGACCGCAAGCTGGATGATCAGGAACAAGCTA
ATCAACTGATTATCAGTACTAACCAGAACTTGGATATACAGCTTAAATCTCTAGATGGCCTGCAAGAACAGCGTGATGCC
ATTATTGAGCGCATGAACCTGATTCAGGGCTTACAGGGTAAACGTCCGGTTACTGTACGTTTGGTGGATGAGCTGGCACG
TGTAATCCCAGCCAATATGTATCTGACCAAATTTGCACGGACTGGTGATAAATTCACTCTCGAAGGGAAGGCAGAAAGCC
CGAACACTGTAGCTGAGCTTTTGCGTGGACTAGAAGCTTCACCTTGGTATCGTAATGCCTTTATGAACTCATTCCTTGCC
GCGGAAGAAAAGAAAGAGCAGAACCCAACTTCGCTGATACCCCGACCAGAAGAAAACTATGGCAGTTTTGTTGTAACTGT
AGACGCAGGCGAGATTGCTGCTGATAGTCCGCCATCGGCTGATCCCAATGCACCAACCAATACAGCAGCAACGGGTCCTG
CAGCGGGAGCAGCACAATGA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

71.364

100

0.717
  comN Acinetobacter baylyi ADP1

68.075

97.26

0.662

Multiple sequence alignment