Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   ABZP31_RS00555 Genome accession   NZ_CP160437
Coordinates   115997..117127 (-) Length   376 a.a.
NCBI ID   WP_034671139.1    Uniprot ID   -
Organism   Acinetobacter sp. FL     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 110997..122127
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABZP31_RS00525 (ABZP31_00525) - 111152..111493 (-) 342 WP_248135392.1 RcnB family protein -
  ABZP31_RS00530 (ABZP31_00530) - 111688..112230 (-) 543 WP_005017263.1 glutathione peroxidase -
  ABZP31_RS00535 (ABZP31_00535) - 112357..112944 (-) 588 WP_367156870.1 viral A-type inclusion protein -
  ABZP31_RS00540 (ABZP31_00540) - 113159..113914 (-) 756 WP_101161660.1 helix-turn-helix transcriptional regulator -
  ABZP31_RS00545 (ABZP31_00545) - 114030..114923 (+) 894 WP_034671137.1 DMT family transporter -
  ABZP31_RS00550 (ABZP31_00550) - 115383..115952 (-) 570 WP_034671138.1 Sua5/YciO/YrdC/YwlC family protein -
  ABZP31_RS00555 (ABZP31_00555) dprA 115997..117127 (-) 1131 WP_034671139.1 DNA-processing protein DprA Machinery gene
  ABZP31_RS00560 (ABZP31_00560) tsaP 117143..118291 (-) 1149 WP_034671140.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  ABZP31_RS00565 (ABZP31_00565) def 118416..118946 (+) 531 WP_005017251.1 peptide deformylase -
  ABZP31_RS00570 (ABZP31_00570) - 119045..119461 (+) 417 WP_171070521.1 DUF2946 family protein -
  ABZP31_RS00575 (ABZP31_00575) - 119527..121590 (+) 2064 WP_248135388.1 TonB-dependent copper receptor -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 41836.62 Da        Isoelectric Point: 6.5819

>NTDB_id=1021107 ABZP31_RS00555 WP_034671139.1 115997..117127(-) (dprA) [Acinetobacter sp. FL]
MIAELSQLHYHSLKLWYLVQHSVSSFNQLVEYFGSAEQATTPAAVARWGNLKLHANHSKRAQEFYSATGQAEFEQLTQRV
LASCDFILVPEDILYPQQLHPYTDKPPILFGQGSAQALSQPQIAIVGSRKPSPHGRQVAYDFAYYLSEKGFYITSGLALG
IDEAAHQGALQHQRTIAVVGTGLDLVYPAHNRKLQEHILQYGGTIVSEFLPGTQPLKHHFPRRNRIVSGLSLGVLVAEAA
LESGSLITAQRAADQGKIIFAIPGHIYSEHHQGCHQLIREGSILVDHPEQLIEDLALPTQWHSQQQKVSSVPEPAQVPEY
LFELYQQLDWVGLDLDQIALKLPLPAAELTGHLMELELLGLCVQQSGRYLRCRPGF

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=1021107 ABZP31_RS00555 WP_034671139.1 115997..117127(-) (dprA) [Acinetobacter sp. FL]
ATGATTGCCGAATTATCGCAGCTTCATTATCACAGTCTGAAGCTGTGGTATTTGGTCCAGCATTCAGTTTCAAGTTTTAA
CCAGCTGGTTGAGTATTTTGGCAGTGCTGAACAGGCAACCACTCCGGCAGCAGTAGCGCGCTGGGGCAATTTAAAACTGC
ATGCCAATCATTCCAAGCGGGCACAGGAATTTTATAGCGCAACCGGTCAGGCTGAGTTTGAACAACTGACCCAACGGGTA
CTGGCAAGTTGCGATTTTATTTTAGTGCCGGAAGATATACTGTATCCGCAGCAGCTGCACCCTTATACAGATAAGCCTCC
GATCCTGTTTGGCCAAGGTTCTGCTCAAGCCTTAAGTCAACCCCAGATCGCGATTGTAGGCAGTCGCAAACCAAGCCCGC
ATGGCCGGCAAGTAGCCTACGACTTTGCGTATTATCTGAGTGAAAAAGGGTTTTATATTACCAGTGGACTTGCCTTGGGA
ATTGATGAGGCAGCACATCAAGGGGCATTGCAGCATCAGCGCACTATTGCTGTAGTCGGAACCGGACTGGATCTGGTCTA
TCCAGCCCATAACCGTAAGCTTCAAGAACACATACTTCAATACGGCGGTACAATTGTCAGTGAGTTTTTACCGGGAACCC
AACCACTCAAGCATCATTTTCCACGCCGTAACCGTATTGTTAGTGGTTTGAGTCTAGGTGTACTGGTGGCAGAAGCCGCT
TTAGAAAGTGGTTCATTGATTACTGCACAGCGTGCCGCCGATCAGGGCAAGATTATTTTTGCCATTCCCGGCCATATCTA
CAGCGAGCATCATCAAGGCTGTCATCAACTCATCCGTGAAGGCTCCATACTGGTAGATCATCCGGAACAGCTGATTGAAG
ATCTGGCTTTACCGACCCAGTGGCACAGCCAGCAACAAAAGGTAAGCAGTGTACCCGAGCCGGCACAGGTACCTGAATAT
CTATTTGAACTGTACCAACAACTAGACTGGGTAGGACTGGATCTAGACCAGATTGCTCTTAAATTGCCATTACCTGCGGC
TGAATTGACCGGACATCTGATGGAACTTGAGTTACTTGGACTATGTGTTCAGCAATCTGGGCGCTATCTGCGTTGCCGTC
CGGGCTTTTAA

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(324-367)

DNA recombination-mediator protein A (DNA_processg_A)

(87-285)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Acinetobacter baumannii strain A118

67.46

100

0.678
  dprA Acinetobacter baumannii D1279779

67.196

100

0.676
  dprA Acinetobacter baylyi ADP1

65.526

100

0.662
  dprA Neisseria meningitidis strain C311

37.817

100

0.396
  dprA Neisseria meningitidis MC58

37.817

100

0.396
  dprA Neisseria gonorrhoeae MS11

36.951

100

0.38
  dprA Neisseria gonorrhoeae strain FA1090

36.693

100

0.378
  dprA Vibrio cholerae strain A1552

43.038

84.043

0.362

Multiple sequence alignment