Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   ABZP31_RS00560 Genome accession   NZ_CP160437
Coordinates   117143..118291 (-) Length   382 a.a.
NCBI ID   WP_034671140.1    Uniprot ID   -
Organism   Acinetobacter sp. FL     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 112143..123291
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABZP31_RS00535 (ABZP31_00535) - 112357..112944 (-) 588 WP_367156870.1 viral A-type inclusion protein -
  ABZP31_RS00540 (ABZP31_00540) - 113159..113914 (-) 756 WP_101161660.1 helix-turn-helix transcriptional regulator -
  ABZP31_RS00545 (ABZP31_00545) - 114030..114923 (+) 894 WP_034671137.1 DMT family transporter -
  ABZP31_RS00550 (ABZP31_00550) - 115383..115952 (-) 570 WP_034671138.1 Sua5/YciO/YrdC/YwlC family protein -
  ABZP31_RS00555 (ABZP31_00555) dprA 115997..117127 (-) 1131 WP_034671139.1 DNA-processing protein DprA Machinery gene
  ABZP31_RS00560 (ABZP31_00560) tsaP 117143..118291 (-) 1149 WP_034671140.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  ABZP31_RS00565 (ABZP31_00565) def 118416..118946 (+) 531 WP_005017251.1 peptide deformylase -
  ABZP31_RS00570 (ABZP31_00570) - 119045..119461 (+) 417 WP_171070521.1 DUF2946 family protein -
  ABZP31_RS00575 (ABZP31_00575) - 119527..121590 (+) 2064 WP_248135388.1 TonB-dependent copper receptor -

Sequence

Protein


Download         Length: 382 a.a.        Molecular weight: 42069.27 Da        Isoelectric Point: 9.4267

>NTDB_id=1021108 ABZP31_RS00560 WP_034671140.1 117143..118291(-) (tsaP) [Acinetobacter sp. FL]
MKKVFKGSALRALGFKKQFIALAICSSLGIIMPGMAEAASRNINPPSLKASAPNVYVVKKGDTLWDIAGKFLSKPWRWPE
IWASNKHVKNPHWIYPGDRLLLCTLDGRPLIGKDEGDGCEGIIRRYGGQTSMQPQVRVESLNNAIPVIPLEHIRVWLERT
LIMSPDSVVNTPYILGTADNRVLAAAGQTVYARGNGLQVGQRYAVYREGEPYIFTDANGKSYNAGVELLQVASGVAVQNE
QDITTLELTQSYNGEVRRGDRVMPEYDSMLPTLFYPTIDHQVTEGGQVIRVMGSIGTAARHSVVTVNRGNIHGVQSGQVF
SVYQQGEVVRDPKTREQIKLPSQRVGNIMIFRTFDQLSYAYVLDSALPIKVGSGIQAPPMAE

Nucleotide


Download         Length: 1149 bp        

>NTDB_id=1021108 ABZP31_RS00560 WP_034671140.1 117143..118291(-) (tsaP) [Acinetobacter sp. FL]
ATGAAAAAAGTTTTCAAAGGCAGCGCACTTCGTGCCTTGGGGTTTAAAAAGCAGTTTATTGCTCTCGCAATCTGTTCAAG
TTTGGGAATAATCATGCCTGGTATGGCTGAAGCAGCCAGCCGTAATATAAATCCGCCCTCTTTAAAAGCCAGTGCTCCTA
ATGTTTATGTGGTCAAAAAAGGGGATACTTTATGGGATATCGCCGGAAAATTCTTGAGTAAGCCGTGGCGCTGGCCAGAA
ATCTGGGCCAGCAACAAACATGTCAAGAATCCACACTGGATTTATCCGGGCGACCGTTTATTGCTGTGTACTCTAGACGG
ACGACCGCTGATCGGTAAAGATGAAGGTGACGGCTGTGAAGGTATTATTCGCCGTTATGGTGGCCAGACCAGTATGCAGC
CACAAGTTCGTGTTGAATCCCTAAATAATGCTATTCCAGTTATTCCGCTTGAACATATTCGGGTCTGGCTGGAACGCACC
CTGATAATGTCACCAGATTCAGTGGTCAATACCCCCTATATTTTAGGCACGGCTGATAACCGGGTATTGGCTGCTGCCGG
CCAAACCGTTTACGCACGCGGTAATGGCCTGCAAGTTGGTCAGCGTTATGCAGTTTATCGTGAGGGTGAGCCTTACATAT
TCACCGATGCTAATGGCAAGTCATATAATGCCGGTGTAGAGCTGCTTCAGGTGGCTTCCGGCGTAGCTGTGCAGAATGAA
CAGGATATTACTACGCTAGAATTAACGCAAAGTTATAATGGGGAAGTCCGTCGCGGGGATCGGGTCATGCCAGAATATGA
TTCTATGTTGCCTACCCTGTTCTATCCAACAATTGACCATCAGGTGACTGAAGGCGGTCAGGTGATTCGGGTGATGGGAT
CAATCGGTACGGCAGCCAGACACAGTGTGGTGACTGTTAACCGGGGCAATATTCATGGGGTTCAGTCCGGTCAGGTATTC
AGTGTCTATCAGCAGGGTGAAGTTGTACGTGATCCGAAAACCCGCGAACAAATCAAACTGCCAAGTCAAAGAGTTGGTAA
TATTATGATTTTCCGTACTTTTGACCAGTTAAGCTATGCTTATGTACTGGACAGCGCCCTACCTATCAAAGTAGGTTCCG
GCATTCAGGCGCCGCCAATGGCAGAGTAA

Domains

Predicted by InterproScan.

LysM domain (LysM)

(56-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

70.526

99.476

0.702

Multiple sequence alignment