Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   AB0A83_RS19540 Genome accession   NZ_CP160405
Coordinates   4323966..4325186 (-) Length   406 a.a.
NCBI ID   WP_150051379.1    Uniprot ID   -
Organism   Methylomonas sp. HYX-M1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4318966..4330186
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB0A83_RS19505 (AB0A83_19505) - 4319036..4319260 (+) 225 WP_367154998.1 sulfurtransferase TusA family protein -
  AB0A83_RS19510 (AB0A83_19510) argJ 4319283..4320497 (+) 1215 WP_150051367.1 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ -
  AB0A83_RS19515 (AB0A83_19515) - 4320498..4321469 (+) 972 WP_367154999.1 Nudix family hydrolase -
  AB0A83_RS19520 (AB0A83_19520) yacG 4321441..4321644 (-) 204 WP_150051371.1 DNA gyrase inhibitor YacG -
  AB0A83_RS19525 (AB0A83_19525) zapD 4321647..4322417 (-) 771 WP_150051373.1 cell division protein ZapD -
  AB0A83_RS19530 (AB0A83_19530) coaE 4322414..4323025 (-) 612 WP_150051375.1 dephospho-CoA kinase -
  AB0A83_RS19535 (AB0A83_19535) pilD 4323027..4323893 (-) 867 WP_367155000.1 A24 family peptidase Machinery gene
  AB0A83_RS19540 (AB0A83_19540) pilC 4323966..4325186 (-) 1221 WP_150051379.1 type II secretion system F family protein Machinery gene
  AB0A83_RS19545 (AB0A83_19545) pilB 4325190..4326902 (-) 1713 WP_150051381.1 type IV-A pilus assembly ATPase PilB Machinery gene
  AB0A83_RS19550 (AB0A83_19550) - 4327001..4327795 (-) 795 WP_150051383.1 response regulator -
  AB0A83_RS19555 (AB0A83_19555) - 4327802..4329244 (-) 1443 WP_367155001.1 HDOD domain-containing protein -

Sequence

Protein


Download         Length: 406 a.a.        Molecular weight: 44324.13 Da        Isoelectric Point: 7.1156

>NTDB_id=1021011 AB0A83_RS19540 WP_150051379.1 4323966..4325186(-) (pilC) [Methylomonas sp. HYX-M1]
MAKESDQIDFLWEGLDKQGKKTGGLFSAKSEAVARTELRKSGVRVIKIKPKPKPLFGPKKQKITSADIAVFARQLATMLE
AGVPLVQSFDIIGKGHDNASMSEMLLSIKADIEGGDTLAQALAKKNLYFDDLFCNLVNAGEQAGVLESLLDKIATYKEKT
ESIRKKVKKALTYPIAVLVVACIVTAVLLIFVVPVFEDLFKGFGADLPAFTQFVIELSRWIQEWWWAIVGVIGASGYTFS
FFKKRSRPFNHFLDRTLLKIPVVGMILEKSAIARFARTLSTMSAAGVPLVEALVSVAGACGNILFYDGVMKMRDDVATGQ
QLQFSMIQTGLFPNMVIQMVAIGEESGSIDSMLDKVADFYEEEVDNLVDNLSSLMEPIIMSVLGVLVGGLIVAMYLPIFK
LGAAVG

Nucleotide


Download         Length: 1221 bp        

>NTDB_id=1021011 AB0A83_RS19540 WP_150051379.1 4323966..4325186(-) (pilC) [Methylomonas sp. HYX-M1]
ATGGCAAAAGAAAGCGATCAAATTGATTTTCTTTGGGAGGGCTTGGATAAACAAGGCAAAAAGACCGGGGGGCTTTTTAG
CGCTAAAAGTGAAGCGGTTGCACGGACGGAGTTAAGAAAGTCCGGGGTTAGGGTCATTAAAATCAAGCCCAAGCCAAAGC
CGTTGTTCGGGCCCAAAAAACAGAAAATAACCAGTGCTGATATTGCGGTTTTTGCCCGGCAATTAGCCACTATGTTGGAA
GCTGGAGTGCCCTTGGTGCAATCTTTCGACATTATCGGCAAAGGTCACGATAACGCGAGTATGTCTGAAATGTTGTTGTC
CATTAAGGCCGATATTGAAGGTGGCGATACCTTAGCGCAGGCACTGGCTAAAAAGAATCTATATTTCGACGATTTGTTTT
GCAATCTGGTGAACGCAGGCGAGCAAGCCGGTGTGTTGGAATCGTTATTGGATAAGATTGCAACCTACAAAGAAAAAACC
GAGTCCATTCGTAAAAAAGTAAAAAAGGCTTTAACTTATCCGATAGCCGTCTTGGTGGTTGCGTGCATTGTGACTGCGGT
GCTTTTAATTTTTGTGGTACCGGTTTTCGAAGATTTGTTTAAAGGGTTTGGCGCCGACTTGCCCGCTTTTACGCAATTCG
TCATTGAATTGTCCCGATGGATACAAGAATGGTGGTGGGCTATTGTCGGTGTGATAGGAGCTTCCGGTTACACCTTTAGT
TTTTTTAAAAAACGCTCTCGGCCTTTTAATCACTTTTTGGATAGAACGTTGTTGAAAATACCCGTGGTGGGAATGATTTT
GGAAAAATCCGCTATTGCGCGGTTTGCCAGGACGCTATCGACCATGTCCGCCGCAGGTGTTCCTCTGGTAGAAGCGTTGG
TTTCCGTTGCAGGAGCGTGCGGTAACATTTTGTTCTACGACGGCGTGATGAAAATGCGCGATGACGTGGCAACCGGTCAG
CAATTGCAATTCTCTATGATTCAGACGGGGTTATTTCCTAATATGGTGATCCAAATGGTAGCCATCGGCGAAGAGTCCGG
TTCCATCGATAGTATGTTGGATAAAGTTGCCGATTTCTACGAAGAGGAGGTGGATAATTTGGTCGATAATCTCAGCAGTT
TGATGGAACCTATCATTATGTCGGTGCTCGGGGTTTTAGTCGGGGGGCTTATCGTGGCGATGTATTTGCCTATTTTCAAA
TTGGGGGCGGCGGTTGGTTAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)

Type II secretion system (T2SS), protein F (T2SSF)

(275-397)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Legionella pneumophila strain ERS1305867

61.307

98.03

0.601
  pilC Pseudomonas stutzeri DSM 10701

57.935

97.783

0.567
  pilC Acinetobacter baumannii D1279779

55.416

97.783

0.542
  pilC Acinetobacter baylyi ADP1

52.897

97.783

0.517
  pilG Neisseria meningitidis 44/76-A

47.487

98.03

0.466
  pilG Neisseria gonorrhoeae MS11

47.355

97.783

0.463
  pilC Vibrio cholerae strain A1552

42

98.522

0.414
  pilC Vibrio campbellii strain DS40M4

40.547

99.015

0.401

Multiple sequence alignment