Detailed information NTG1021010

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: AB0A83_RS19535
• Genome accession: NZ_CP160405
• Coordinates: 4323027..4323893 (-)
• Length: 288 a.a.
• NCBI ID: WP_367155000.1
• Uniprot ID: -
• Organism: Methylomonas sp. HYX-M1
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4318027..4328893

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB0A83_RS19505 (AB0A83_19505)	-	4319036..4319260 (+)	225	WP_367154998.1	sulfurtransferase TusA family protein	-
AB0A83_RS19510 (AB0A83_19510)	argJ	4319283..4320497 (+)	1215	WP_150051367.1	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	-
AB0A83_RS19515 (AB0A83_19515)	-	4320498..4321469 (+)	972	WP_367154999.1	Nudix family hydrolase	-
AB0A83_RS19520 (AB0A83_19520)	yacG	4321441..4321644 (-)	204	WP_150051371.1	DNA gyrase inhibitor YacG	-
AB0A83_RS19525 (AB0A83_19525)	zapD	4321647..4322417 (-)	771	WP_150051373.1	cell division protein ZapD	-
AB0A83_RS19530 (AB0A83_19530)	coaE	4322414..4323025 (-)	612	WP_150051375.1	dephospho-CoA kinase	-
AB0A83_RS19535 (AB0A83_19535)	pilD	4323027..4323893 (-)	867	WP_367155000.1	A24 family peptidase	Machinery gene
AB0A83_RS19540 (AB0A83_19540)	pilC	4323966..4325186 (-)	1221	WP_150051379.1	type II secretion system F family protein	Machinery gene
AB0A83_RS19545 (AB0A83_19545)	pilB	4325190..4326902 (-)	1713	WP_150051381.1	type IV-A pilus assembly ATPase PilB	Machinery gene
AB0A83_RS19550 (AB0A83_19550)	-	4327001..4327795 (-)	795	WP_150051383.1	response regulator	-

Sequence

Protein

• Length: 288 a.a.
• Molecular weight: 32065.29 Da
• Isoelectric Point: 7.2955

>NTDB_id=1021010 AB0A83_RS19535 WP_367155000.1 4323027..4323893(-) (pilD) [Methylomonas sp. HYX-M1]
MLVETLQQSMLMLVSLTFVLGLMIGSFLNVVVYRLPLMMQKAWRRDCLEYLELPPEQDAEAFNLIWPGSRCPSCRAEIKP
HQNIPILSYLLLRGKCANCSAHITWRYPLLEAFTAISSAMVALHFGYGIALAFALLLTWSLIALSVIDIDHQLLPDSITL
PLLWLGLLLSLFSLYTDSHSAIIGAIAGYLSLWSIYWLFKLLTGKEGMGYGDFKLLALLGAWLGWQFLPLIIVLASFVGA
LIGVVSIVLKRQDISRPIPFGPYLAGAGWLALIYGREINQFYLGITGL

Nucleotide

• Length: 867 bp

>NTDB_id=1021010 AB0A83_RS19535 WP_367155000.1 4323027..4323893(-) (pilD) [Methylomonas sp. HYX-M1]
ATGTTAGTCGAAACCTTGCAGCAATCCATGCTAATGCTGGTGAGCCTGACATTCGTGTTGGGCTTAATGATTGGTAGCTT
TTTGAATGTCGTAGTTTATCGGCTCCCGCTGATGATGCAAAAGGCTTGGCGCAGAGATTGTCTGGAGTATTTGGAGTTAC
CGCCGGAACAGGATGCCGAGGCTTTCAACTTGATTTGGCCTGGCTCGCGTTGTCCAAGTTGCCGAGCCGAAATCAAACCG
CATCAAAATATTCCTATCTTGAGTTATCTTTTGCTTCGCGGTAAATGCGCCAATTGCTCCGCACACATTACTTGGCGTTA
TCCATTATTAGAGGCTTTTACCGCGATTTCGTCCGCTATGGTTGCCCTTCATTTTGGATACGGAATAGCGCTGGCATTTG
CTTTATTGCTGACCTGGAGTCTAATCGCGTTAAGTGTTATCGACATAGATCACCAATTACTACCGGATTCCATCACCCTG
CCACTGCTCTGGTTAGGCTTATTGCTAAGTTTGTTTTCCCTTTATACCGACAGTCACAGCGCCATTATCGGAGCGATAGC
CGGTTATCTAAGCCTTTGGAGTATTTACTGGCTATTCAAATTGCTTACCGGGAAAGAAGGTATGGGGTATGGCGACTTTA
AGTTGTTGGCGTTGTTGGGAGCTTGGTTAGGTTGGCAATTTTTGCCGTTGATCATTGTGCTTGCATCGTTCGTTGGCGCG
CTTATCGGCGTTGTTTCGATAGTGTTGAAACGACAGGATATTAGCCGACCCATCCCATTTGGCCCTTATCTGGCGGGGGC
CGGCTGGTTGGCGCTAATTTACGGTAGGGAAATCAACCAATTCTACCTAGGTATTACAGGTTTATAG

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (19-125)

• Type IV leader peptidase family (Peptidase_A24) (136-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	51.211	100	0.514
pilD	Vibrio cholerae strain A1552	52.381	94.792	0.497
pilD	Acinetobacter baumannii D1279779	50.357	97.222	0.49
pilD	Acinetobacter nosocomialis M2	50.357	97.222	0.49
pilD	Neisseria gonorrhoeae MS11	50.388	89.583	0.451