Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   ABUE11_RS15465 Genome accession   NZ_CP160388
Coordinates   3280801..3281334 (-) Length   177 a.a.
NCBI ID   WP_367066238.1    Uniprot ID   -
Organism   Oryzisolibacter sp. LB2S     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3275801..3286334
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABUE11_RS15430 - 3275961..3276950 (+) 990 WP_367066231.1 DnaJ C-terminal domain-containing protein -
  ABUE11_RS15435 - 3276952..3277275 (+) 324 WP_367066232.1 chaperone modulator CbpM -
  ABUE11_RS15440 - 3277437..3277676 (+) 240 WP_367066233.1 hypothetical protein -
  ABUE11_RS15445 - 3277680..3278165 (+) 486 WP_367066234.1 TA system VapC family ribonuclease toxin -
  ABUE11_RS15450 - 3278152..3279171 (-) 1020 WP_367066235.1 IS30 family transposase -
  ABUE11_RS15455 - 3279290..3280066 (-) 777 WP_367066236.1 hypothetical protein -
  ABUE11_RS15460 pilE 3280103..3280639 (-) 537 WP_367066237.1 pilin Machinery gene
  ABUE11_RS15465 pilE 3280801..3281334 (-) 534 WP_367066238.1 pilin Machinery gene
  ABUE11_RS15470 - 3281561..3282088 (+) 528 WP_367066239.1 hypothetical protein -
  ABUE11_RS15475 - 3282406..3283176 (-) 771 WP_367066240.1 ATP-binding protein -
  ABUE11_RS15480 glmU 3283334..3284758 (-) 1425 WP_367066241.1 bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU -
  ABUE11_RS15485 - 3284864..3285208 (-) 345 WP_367066242.1 DUF2917 domain-containing protein -
  ABUE11_RS15490 - 3285330..3286316 (+) 987 WP_367066243.1 LysR substrate-binding domain-containing protein -

Sequence

Protein


Download         Length: 177 a.a.        Molecular weight: 17892.32 Da        Isoelectric Point: 6.2692

>NTDB_id=1020764 ABUE11_RS15465 WP_367066238.1 3280801..3281334(-) (pilE) [Oryzisolibacter sp. LB2S]
MKTQLQKGFTLIELMIVVAIIGILAAVALPAYQDYTVRSKVSEVLIAASSPKSLISEAFQSDSLAGVTAAATEYNARPAA
EKTSKFVGGITIDTATGDITVTTAAAATSGLPTDAAGTNVVFRPNVNNVALAAGATGAIDWACTSSTNTTSTARGLGNNA
VAPATPLPAKYAPSECR

Nucleotide


Download         Length: 534 bp        

>NTDB_id=1020764 ABUE11_RS15465 WP_367066238.1 3280801..3281334(-) (pilE) [Oryzisolibacter sp. LB2S]
ATGAAAACGCAACTGCAAAAGGGCTTTACCCTGATCGAACTGATGATCGTGGTGGCGATCATCGGCATTTTGGCTGCCGT
GGCCTTGCCGGCGTATCAAGACTACACCGTGCGCTCCAAGGTCTCGGAGGTGCTCATTGCTGCATCCTCGCCCAAGAGCC
TGATCAGCGAAGCCTTCCAAAGCGACAGCCTGGCCGGCGTGACCGCTGCGGCGACGGAATACAACGCCCGCCCTGCCGCC
GAGAAGACCAGCAAGTTCGTTGGTGGCATCACGATCGATACCGCAACCGGCGATATCACCGTGACCACGGCTGCTGCGGC
CACCTCCGGCCTGCCGACCGACGCCGCTGGCACGAACGTGGTGTTTCGGCCGAATGTGAACAACGTTGCGTTGGCCGCTG
GTGCCACGGGTGCCATCGACTGGGCCTGCACCTCGTCTACCAACACCACGTCGACCGCGCGCGGCTTGGGCAACAACGCT
GTCGCGCCTGCGACCCCCCTGCCCGCCAAGTACGCACCGTCCGAGTGCCGTTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(6-29)

Pilin (bacterial filament) (Pilin)

(37-177)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria elongata subsp. glycolytica ATCC 29315

53.763

100

0.565
  pilA Ralstonia pseudosolanacearum GMI1000

39.785

100

0.418
  pilA2 Legionella pneumophila str. Paris

42.442

97.175

0.412
  pilA2 Legionella pneumophila strain ERS1305867

41.86

97.175

0.407
  comP Acinetobacter baylyi ADP1

39.665

100

0.401
  pilA/pilAI Pseudomonas stutzeri DSM 10701

38.068

99.435

0.379
  pilE Neisseria gonorrhoeae strain FA1090

36.464

100

0.373

Multiple sequence alignment