Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   ABUE11_RS15460 Genome accession   NZ_CP160388
Coordinates   3280103..3280639 (-) Length   178 a.a.
NCBI ID   WP_367066237.1    Uniprot ID   -
Organism   Oryzisolibacter sp. LB2S     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3275103..3285639
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABUE11_RS15425 - 3275343..3275834 (+) 492 WP_367066230.1 Lrp/AsnC family transcriptional regulator -
  ABUE11_RS15430 - 3275961..3276950 (+) 990 WP_367066231.1 DnaJ C-terminal domain-containing protein -
  ABUE11_RS15435 - 3276952..3277275 (+) 324 WP_367066232.1 chaperone modulator CbpM -
  ABUE11_RS15440 - 3277437..3277676 (+) 240 WP_367066233.1 hypothetical protein -
  ABUE11_RS15445 - 3277680..3278165 (+) 486 WP_367066234.1 TA system VapC family ribonuclease toxin -
  ABUE11_RS15450 - 3278152..3279171 (-) 1020 WP_367066235.1 IS30 family transposase -
  ABUE11_RS15455 - 3279290..3280066 (-) 777 WP_367066236.1 hypothetical protein -
  ABUE11_RS15460 pilE 3280103..3280639 (-) 537 WP_367066237.1 pilin Machinery gene
  ABUE11_RS15465 pilE 3280801..3281334 (-) 534 WP_367066238.1 pilin Machinery gene
  ABUE11_RS15470 - 3281561..3282088 (+) 528 WP_367066239.1 hypothetical protein -
  ABUE11_RS15475 - 3282406..3283176 (-) 771 WP_367066240.1 ATP-binding protein -
  ABUE11_RS15480 glmU 3283334..3284758 (-) 1425 WP_367066241.1 bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU -
  ABUE11_RS15485 - 3284864..3285208 (-) 345 WP_367066242.1 DUF2917 domain-containing protein -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18316.03 Da        Isoelectric Point: 10.1447

>NTDB_id=1020763 ABUE11_RS15460 WP_367066237.1 3280103..3280639(-) (pilE) [Oryzisolibacter sp. LB2S]
MHQHPRPHAHPHSGFTLIELMIVVAIIGILAAIALPAYQDYTTRAKITEVMVAGTSAKAAVTEAFQTGGVGAVTGLANEY
NARPVAQKRSKFVANIQMHTTQGIVTVTTAGAASGLPGDAQGRTLIFTPNVRGALIAPGVTGALDWACASSTRATATNRG
LVSGTGTLPAKYAPAECR

Nucleotide


Download         Length: 537 bp        

>NTDB_id=1020763 ABUE11_RS15460 WP_367066237.1 3280103..3280639(-) (pilE) [Oryzisolibacter sp. LB2S]
ATGCACCAGCACCCCCGCCCCCACGCCCACCCACACAGCGGCTTCACCCTGATCGAGCTGATGATTGTGGTGGCCATCAT
CGGCATTCTGGCCGCCATTGCCCTGCCGGCCTATCAGGACTACACCACGCGCGCCAAGATCACCGAGGTCATGGTGGCCG
GCACCTCGGCCAAGGCGGCGGTGACCGAGGCCTTCCAGACCGGCGGCGTGGGCGCCGTGACCGGCCTGGCCAATGAATAC
AACGCCCGCCCGGTGGCGCAAAAACGCTCCAAGTTCGTGGCCAACATCCAGATGCACACCACCCAAGGCATTGTGACGGT
GACCACCGCTGGCGCAGCCTCGGGCCTGCCGGGCGACGCCCAGGGCCGCACGCTGATCTTCACGCCCAATGTGCGGGGCG
CCCTGATTGCTCCGGGTGTGACCGGCGCGCTGGACTGGGCCTGCGCCTCCAGCACCCGCGCCACGGCCACCAACCGGGGG
CTGGTGAGCGGCACTGGAACCCTGCCCGCCAAGTACGCGCCGGCGGAATGCCGTTGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(12-35)

Pilin (bacterial filament) (Pilin)

(43-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria elongata subsp. glycolytica ATCC 29315

46.739

100

0.483
  pilA Ralstonia pseudosolanacearum GMI1000

42.857

98.315

0.421
  pilA2 Legionella pneumophila strain ERS1305867

40.23

97.753

0.393
  pilA2 Legionella pneumophila str. Paris

40.719

93.82

0.382

Multiple sequence alignment