Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ABUE11_RS14685 Genome accession   NZ_CP160388
Coordinates   3108375..3109592 (+) Length   405 a.a.
NCBI ID   WP_367066045.1    Uniprot ID   -
Organism   Oryzisolibacter sp. LB2S     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3103375..3114592
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABUE11_RS14660 - 3103541..3103933 (+) 393 WP_367066038.1 hypothetical protein -
  ABUE11_RS14665 - 3103937..3104956 (-) 1020 WP_367066039.1 IS30 family transposase -
  ABUE11_RS14670 - 3105479..3105661 (+) 183 WP_367066040.1 hypothetical protein -
  ABUE11_RS14675 - 3105667..3106008 (-) 342 WP_367066042.1 helix-turn-helix domain-containing protein -
  ABUE11_RS14680 pilB 3106616..3108355 (+) 1740 WP_367066044.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ABUE11_RS14685 pilC 3108375..3109592 (+) 1218 WP_367066045.1 type II secretion system F family protein Machinery gene
  ABUE11_RS14690 - 3109592..3110473 (+) 882 WP_367066046.1 A24 family peptidase -
  ABUE11_RS14695 coaE 3110474..3111109 (+) 636 WP_367066047.1 dephospho-CoA kinase -
  ABUE11_RS14700 zapD 3111137..3111892 (+) 756 WP_367066048.1 cell division protein ZapD -
  ABUE11_RS14705 - 3111901..3112113 (+) 213 WP_367066049.1 DNA gyrase inhibitor YacG -
  ABUE11_RS14710 - 3112176..3112601 (-) 426 WP_367066050.1 NUDIX domain-containing protein -
  ABUE11_RS14715 - 3112598..3113470 (-) 873 WP_367066052.1 ATP-binding protein -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44356.37 Da        Isoelectric Point: 9.3573

>NTDB_id=1020762 ABUE11_RS14685 WP_367066045.1 3108375..3109592(+) (pilC) [Oryzisolibacter sp. LB2S]
MATIASRSIKDFVFEWEGKDRSGKIIRGEVRAAGENQVKATLRRQGVLPTKIKKRRMTAGKKIKPKDIALFTRQMATMMK
AGVPLLQAFDIVGRGNNNPSVTKLLNDIRADVETGTSLNAAFRKYPMYFDSLYCNLVEAGEAAGILEALLDRLALYMEKT
EAIKAKIRSALMYPISVLIVAFVVVTVIMIFVIPAFKEVFTSFGADLPGPTLLVMAISEFFVAYWWLIFGVIGGGFYFFM
QAWKRSERMQQVMDRFLLKMPVFGALIDKSCVARWTRTLSTMFAAGVPLVEALDSVGGAAGNSVYAMATDKIQQEVSTGT
SLTAAMGNANVFPSMVLQMCAIGEESGSIDHMLGKAADFYEAEVDEMVAGLSSLMEPIIIVFLGTLIGGIVVSMYLPIFK
LGQVV

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=1020762 ABUE11_RS14685 WP_367066045.1 3108375..3109592(+) (pilC) [Oryzisolibacter sp. LB2S]
ATGGCGACCATCGCATCGAGGAGCATCAAGGATTTTGTCTTTGAGTGGGAAGGCAAGGATCGCAGCGGAAAAATAATACG
TGGTGAGGTCCGGGCGGCGGGAGAAAACCAGGTCAAGGCCACGCTCCGGCGCCAGGGCGTATTGCCCACGAAGATCAAAA
AGCGCCGCATGACCGCGGGCAAGAAGATCAAGCCCAAGGATATTGCGCTGTTCACACGCCAGATGGCCACCATGATGAAG
GCCGGTGTGCCTTTGCTGCAGGCATTCGACATTGTGGGCCGCGGCAACAACAACCCGAGTGTGACCAAGCTGCTCAACGA
CATTCGCGCCGACGTGGAAACGGGCACGTCCCTGAATGCCGCCTTCCGCAAGTACCCCATGTACTTTGACAGCCTGTACT
GCAACCTGGTCGAGGCAGGCGAGGCCGCCGGTATTCTGGAGGCCTTGCTCGATCGCCTGGCCCTCTACATGGAGAAGACC
GAGGCCATCAAGGCCAAGATCCGATCGGCCCTGATGTACCCGATCTCGGTGCTCATCGTCGCATTCGTCGTGGTGACCGT
GATCATGATCTTCGTGATCCCGGCGTTCAAGGAGGTGTTCACCTCCTTCGGCGCCGACCTGCCGGGCCCGACCCTGCTGG
TGATGGCCATCAGCGAGTTCTTTGTCGCCTATTGGTGGCTGATATTCGGGGTCATCGGCGGGGGCTTTTATTTCTTCATG
CAGGCGTGGAAGCGCAGCGAGCGCATGCAGCAGGTCATGGACCGCTTCCTGCTCAAGATGCCCGTCTTCGGTGCGCTCAT
CGACAAATCCTGCGTGGCCCGCTGGACGCGCACGCTGTCGACCATGTTCGCCGCGGGCGTGCCGCTGGTGGAGGCGCTCG
ATTCCGTGGGTGGCGCAGCGGGCAACTCCGTCTACGCCATGGCCACGGACAAGATCCAGCAGGAGGTCTCCACCGGCACC
AGCCTCACGGCGGCCATGGGCAATGCCAATGTGTTCCCGTCCATGGTGCTGCAGATGTGCGCCATCGGCGAGGAGTCGGG
CTCCATCGACCACATGCTGGGCAAGGCCGCGGACTTCTACGAAGCCGAGGTCGACGAGATGGTGGCCGGACTGTCCAGCC
TCATGGAGCCCATCATCATCGTGTTCCTGGGCACGCTCATTGGCGGCATCGTGGTCTCCATGTACCTGCCCATCTTCAAG
CTCGGGCAAGTGGTTTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)

Type II secretion system (T2SS), protein F (T2SSF)

(275-397)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

54.815

100

0.548
  pilG Neisseria gonorrhoeae MS11

52.02

97.778

0.509
  pilG Neisseria meningitidis 44/76-A

51.515

97.778

0.504
  pilC Acinetobacter baylyi ADP1

50

98.272

0.491
  pilC Legionella pneumophila strain ERS1305867

50

98.272

0.491
  pilC Acinetobacter baumannii D1279779

48.363

98.025

0.474
  pilC Vibrio campbellii strain DS40M4

38.889

100

0.398
  pilC Vibrio cholerae strain A1552

39.698

98.272

0.39
  pilC Thermus thermophilus HB27

37.594

98.519

0.37

Multiple sequence alignment