Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   QRP18_RS12685 Genome accession   NZ_CP160382
Coordinates   2759883..2761106 (+) Length   407 a.a.
NCBI ID   WP_025523095.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain ST110-8     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2754883..2766106
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRP18_RS12665 (QRP18_12665) ampD 2755936..2756487 (-) 552 WP_110177559.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  QRP18_RS12670 (QRP18_12670) nadC 2756580..2757467 (+) 888 WP_015297249.1 carboxylating nicotinate-nucleotide diphosphorylase -
  QRP18_RS12675 (QRP18_12675) pilA 2757731..2758162 (+) 432 WP_025508892.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  QRP18_RS12680 (QRP18_12680) pilB 2758173..2759858 (+) 1686 WP_140062768.1 type IV-A pilus assembly ATPase PilB Machinery gene
  QRP18_RS12685 (QRP18_12685) pilC 2759883..2761106 (+) 1224 WP_025523095.1 type II secretion system F family protein Machinery gene
  QRP18_RS12690 (QRP18_12690) pilD 2761171..2762040 (+) 870 WP_140062767.1 A24 family peptidase Machinery gene
  QRP18_RS12695 (QRP18_12695) coaE 2762041..2762655 (+) 615 WP_005480887.1 dephospho-CoA kinase -
  QRP18_RS12700 (QRP18_12700) zapD 2762683..2763423 (+) 741 WP_023624252.1 cell division protein ZapD -
  QRP18_RS12705 (QRP18_12705) yacG 2763492..2763686 (+) 195 WP_005462546.1 DNA gyrase inhibitor YacG -
  QRP18_RS12710 (QRP18_12710) rplS 2764061..2764414 (-) 354 WP_005462554.1 50S ribosomal protein L19 -
  QRP18_RS12715 (QRP18_12715) trmD 2764456..2765199 (-) 744 WP_110177556.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  QRP18_RS12720 (QRP18_12720) rimM 2765227..2765775 (-) 549 WP_005462552.1 ribosome maturation factor RimM -
  QRP18_RS12725 (QRP18_12725) rpsP 2765804..2766052 (-) 249 WP_005379962.1 30S ribosomal protein S16 -

Sequence

Protein


Download         Length: 407 a.a.        Molecular weight: 45237.43 Da        Isoelectric Point: 10.3996

>NTDB_id=1020550 QRP18_RS12685 WP_025523095.1 2759883..2761106(+) (pilC) [Vibrio parahaemolyticus strain ST110-8]
MKTTTPQLKNFRWKGVNSSGKKTSGQTLAMSEIEVRERLDAQHIKIKKLKKSSISFLTKLSHRVKGKDITVFTRQISTML
VTGVPLVQALKLVSDNHKKAEMKSILMSVTRAVEAGTPMSKAMRTASNHFDPLYTDLIATGEQSGNLAEVFERLATYREK
NEQLRAKVIKALIYPAMVILVALGVSFIMLTKVIPEFEKMFVGFGAELPWFTRQVLDLSAWTQNWSPFIALGSISLFISA
RVLSMRSDSFRLMLNRSVLKFPVLGAVLSKAAIAKFSRTLATSFTAGIPILTSLKTTSKTSGNMHYQLAIEEVYRDTAAG
MPMYVAMRNCNVFPELVLQMVMIGEESGRLDDMLNKVATIYEFEVDNTVDNLSKILEPLIIVFLGIVVGGLVTAMYLPIF
NLMSVLG

Nucleotide


Download         Length: 1224 bp        

>NTDB_id=1020550 QRP18_RS12685 WP_025523095.1 2759883..2761106(+) (pilC) [Vibrio parahaemolyticus strain ST110-8]
ATGAAAACTACGACACCACAATTAAAGAACTTCCGTTGGAAAGGCGTCAACAGCTCAGGGAAAAAGACCTCTGGTCAAAC
TCTGGCAATGAGCGAAATCGAAGTACGAGAGCGCTTAGATGCCCAGCACATCAAAATCAAAAAGCTAAAGAAAAGCAGCA
TCTCTTTTTTGACCAAACTTAGCCATCGCGTAAAAGGGAAAGACATCACGGTTTTCACTCGTCAAATCTCAACGATGCTG
GTAACCGGTGTGCCGCTAGTACAAGCATTGAAATTGGTCTCTGATAACCACAAAAAAGCGGAAATGAAATCCATTTTGAT
GAGTGTAACTCGGGCTGTTGAAGCGGGTACGCCGATGTCCAAAGCGATGCGTACCGCCAGTAACCATTTTGACCCGCTGT
ATACCGACCTGATTGCGACAGGAGAACAATCGGGCAACTTAGCCGAAGTGTTCGAACGCTTAGCCACCTACAGGGAAAAA
AATGAGCAGCTTAGAGCCAAAGTGATCAAGGCTCTAATATATCCAGCCATGGTTATTCTAGTTGCACTGGGAGTATCGTT
TATCATGCTAACCAAGGTCATTCCCGAGTTTGAAAAAATGTTTGTTGGCTTTGGTGCTGAATTGCCATGGTTTACAAGGC
AAGTCTTAGATCTTTCCGCTTGGACACAAAACTGGAGCCCATTTATCGCACTTGGCTCCATCAGTTTATTTATCTCCGCG
AGAGTACTCTCTATGCGTTCTGACTCTTTTCGCTTAATGCTCAACCGCTCTGTGCTTAAGTTTCCAGTCCTTGGGGCAGT
TTTATCGAAAGCCGCTATCGCAAAATTTAGTCGAACCCTCGCTACGAGCTTTACGGCGGGCATTCCGATTTTAACCAGTT
TAAAAACCACCTCGAAAACGTCCGGAAATATGCATTATCAATTGGCTATCGAAGAGGTTTATCGCGATACCGCAGCAGGA
ATGCCGATGTATGTTGCAATGCGCAATTGCAACGTGTTCCCTGAGTTGGTGCTGCAAATGGTTATGATCGGCGAAGAATC
CGGCCGACTTGACGATATGCTCAATAAAGTCGCCACAATTTACGAGTTTGAAGTGGACAACACCGTCGATAACCTCAGTA
AAATCTTAGAACCATTAATTATCGTTTTTTTAGGTATCGTTGTCGGTGGCCTGGTCACAGCAATGTACTTGCCAATCTTT
AACTTAATGAGTGTATTGGGCTAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(276-398)

Type II secretion system (T2SS), protein F (T2SSF)

(72-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio campbellii strain DS40M4

86.241

100

0.862
  pilC Vibrio cholerae strain A1552

74.074

99.509

0.737
  pilC Acinetobacter baylyi ADP1

42.75

98.28

0.42
  pilC Acinetobacter baumannii D1279779

41.191

99.017

0.408
  pilC Legionella pneumophila strain ERS1305867

40.342

100

0.405
  pilG Neisseria gonorrhoeae MS11

40.494

99.509

0.403
  pilC Pseudomonas stutzeri DSM 10701

40.909

97.297

0.398
  pilG Neisseria meningitidis 44/76-A

39.901

99.754

0.398

Multiple sequence alignment