Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | QRP18_RS12675 | Genome accession | NZ_CP160382 |
| Coordinates | 2757731..2758162 (+) | Length | 143 a.a. |
| NCBI ID | WP_025508892.1 | Uniprot ID | - |
| Organism | Vibrio parahaemolyticus strain ST110-8 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2752731..2763162
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QRP18_RS12660 (QRP18_12660) | pdhR | 2754763..2755530 (-) | 768 | WP_005462576.1 | pyruvate dehydrogenase complex transcriptional repressor PdhR | - |
| QRP18_RS12665 (QRP18_12665) | ampD | 2755936..2756487 (-) | 552 | WP_110177559.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| QRP18_RS12670 (QRP18_12670) | nadC | 2756580..2757467 (+) | 888 | WP_015297249.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| QRP18_RS12675 (QRP18_12675) | pilA | 2757731..2758162 (+) | 432 | WP_025508892.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | Machinery gene |
| QRP18_RS12680 (QRP18_12680) | pilB | 2758173..2759858 (+) | 1686 | WP_140062768.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| QRP18_RS12685 (QRP18_12685) | pilC | 2759883..2761106 (+) | 1224 | WP_025523095.1 | type II secretion system F family protein | Machinery gene |
| QRP18_RS12690 (QRP18_12690) | pilD | 2761171..2762040 (+) | 870 | WP_140062767.1 | A24 family peptidase | Machinery gene |
| QRP18_RS12695 (QRP18_12695) | coaE | 2762041..2762655 (+) | 615 | WP_005480887.1 | dephospho-CoA kinase | - |
Sequence
Protein
Download Length: 143 a.a. Molecular weight: 14600.49 Da Isoelectric Point: 5.0187
>NTDB_id=1020548 QRP18_RS12675 WP_025508892.1 2757731..2758162(+) (pilA) [Vibrio parahaemolyticus strain ST110-8]
MKHSKQKKQQGFTLIELMIVVAIIGVLAAVAIPAYQDYVKKSEAASALATLKSLITPAELYYQENGTSSAAGLSDLGSVA
SANDLGTLTSAIGSGSGAVPTLEFAFGSNSSMTSSDTLTFSRSATEGWSCARAGTVPAIDGCQ
MKHSKQKKQQGFTLIELMIVVAIIGVLAAVAIPAYQDYVKKSEAASALATLKSLITPAELYYQENGTSSAAGLSDLGSVA
SANDLGTLTSAIGSGSGAVPTLEFAFGSNSSMTSSDTLTFSRSATEGWSCARAGTVPAIDGCQ
Nucleotide
Download Length: 432 bp
>NTDB_id=1020548 QRP18_RS12675 WP_025508892.1 2757731..2758162(+) (pilA) [Vibrio parahaemolyticus strain ST110-8]
ATGAAACACAGTAAACAGAAAAAACAACAGGGTTTTACTCTTATTGAGTTGATGATTGTAGTGGCGATTATCGGTGTATT
GGCTGCTGTCGCCATACCAGCTTATCAAGACTACGTAAAAAAATCAGAAGCCGCATCAGCTCTTGCTACTTTAAAGTCCC
TAATTACTCCGGCTGAACTCTATTATCAAGAAAATGGAACGAGCTCGGCTGCTGGTCTTTCTGATTTAGGTTCAGTAGCT
TCAGCTAACGATTTAGGCACACTAACATCAGCAATTGGATCTGGTTCAGGTGCGGTACCAACTCTAGAATTTGCTTTTGG
TTCAAATAGCTCAATGACCTCGAGTGATACTTTAACTTTCTCTCGTAGTGCAACCGAAGGTTGGTCTTGTGCTCGTGCTG
GTACAGTCCCAGCAATTGATGGCTGCCAATAA
ATGAAACACAGTAAACAGAAAAAACAACAGGGTTTTACTCTTATTGAGTTGATGATTGTAGTGGCGATTATCGGTGTATT
GGCTGCTGTCGCCATACCAGCTTATCAAGACTACGTAAAAAAATCAGAAGCCGCATCAGCTCTTGCTACTTTAAAGTCCC
TAATTACTCCGGCTGAACTCTATTATCAAGAAAATGGAACGAGCTCGGCTGCTGGTCTTTCTGATTTAGGTTCAGTAGCT
TCAGCTAACGATTTAGGCACACTAACATCAGCAATTGGATCTGGTTCAGGTGCGGTACCAACTCTAGAATTTGCTTTTGG
TTCAAATAGCTCAATGACCTCGAGTGATACTTTAACTTTCTCTCGTAGTGCAACCGAAGGTTGGTCTTGTGCTCGTGCTG
GTACAGTCCCAGCAATTGATGGCTGCCAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Vibrio parahaemolyticus RIMD 2210633 |
63.38 |
99.301 |
0.629 |
| pilA | Pseudomonas aeruginosa PAK |
44.776 |
93.706 |
0.42 |
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
41.606 |
95.804 |
0.399 |
| pilA | Vibrio cholerae strain A1552 |
41.606 |
95.804 |
0.399 |
| pilA | Vibrio cholerae C6706 |
41.606 |
95.804 |
0.399 |
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
41.176 |
95.105 |
0.392 |