Detailed information NTG1020551

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: QRP18_RS12690
• Genome accession: NZ_CP160382
• Coordinates: 2761171..2762040 (+)
• Length: 289 a.a.
• NCBI ID: WP_140062767.1
• Uniprot ID: -
• Organism: Vibrio parahaemolyticus strain ST110-8
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2756171..2767040

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QRP18_RS12670 (QRP18_12670)	nadC	2756580..2757467 (+)	888	WP_015297249.1	carboxylating nicotinate-nucleotide diphosphorylase	-
QRP18_RS12675 (QRP18_12675)	pilA	2757731..2758162 (+)	432	WP_025508892.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	Machinery gene
QRP18_RS12680 (QRP18_12680)	pilB	2758173..2759858 (+)	1686	WP_140062768.1	type IV-A pilus assembly ATPase PilB	Machinery gene
QRP18_RS12685 (QRP18_12685)	pilC	2759883..2761106 (+)	1224	WP_025523095.1	type II secretion system F family protein	Machinery gene
QRP18_RS12690 (QRP18_12690)	pilD	2761171..2762040 (+)	870	WP_140062767.1	A24 family peptidase	Machinery gene
QRP18_RS12695 (QRP18_12695)	coaE	2762041..2762655 (+)	615	WP_005480887.1	dephospho-CoA kinase	-
QRP18_RS12700 (QRP18_12700)	zapD	2762683..2763423 (+)	741	WP_023624252.1	cell division protein ZapD	-
QRP18_RS12705 (QRP18_12705)	yacG	2763492..2763686 (+)	195	WP_005462546.1	DNA gyrase inhibitor YacG	-
QRP18_RS12710 (QRP18_12710)	rplS	2764061..2764414 (-)	354	WP_005462554.1	50S ribosomal protein L19	-
QRP18_RS12715 (QRP18_12715)	trmD	2764456..2765199 (-)	744	WP_110177556.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
QRP18_RS12720 (QRP18_12720)	rimM	2765227..2765775 (-)	549	WP_005462552.1	ribosome maturation factor RimM	-
QRP18_RS12725 (QRP18_12725)	rpsP	2765804..2766052 (-)	249	WP_005379962.1	30S ribosomal protein S16	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32313.43 Da
• Isoelectric Point: 7.5705

>NTDB_id=1020551 QRP18_RS12690 WP_140062767.1 2761171..2762040(+) (pilD) [Vibrio parahaemolyticus strain ST110-8]
MEVFQYYPWLFVVFASIFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYKIKPPQEVLTLSVPRSSCQNCATPIRIR
DNIPVISWLLLKGKCHHCHTAISPRYPLIELLTAACAGFVAYHFGFSYFTVALIFFTFVLIAATFIDLDTMLLPDQLTLP
LTWAGIALALTEISPVSLQDAVIGAIAGYLCLWSVYWGFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPMIILLSSVVGV
IFGLVQLRLQKQGIEKAFPFGPYLAIAGWVSLIRGDQILSWYLTSILGV

Nucleotide

• Length: 870 bp

>NTDB_id=1020551 QRP18_RS12690 WP_140062767.1 2761171..2762040(+) (pilD) [Vibrio parahaemolyticus strain ST110-8]
ATGGAAGTGTTCCAGTACTACCCTTGGCTATTCGTGGTGTTTGCCAGTATCTTCGGTTTAATTGTGGGTAGTTTTCTTAA
TGTAGTCATTTATCGGCTACCTAAAATCATGGAATTAGAATGGCGCCGTGAATGCGCCGAATCATTCCCTGAATATAAGA
TTAAGCCACCTCAAGAAGTTTTGACATTAAGCGTGCCTCGCTCTTCGTGCCAAAACTGCGCGACGCCAATTCGTATTCGA
GACAATATTCCTGTAATCAGCTGGCTACTGTTAAAAGGAAAATGCCATCATTGTCATACCGCAATTAGTCCTCGATATCC
GCTGATAGAATTACTCACTGCAGCGTGCGCTGGTTTTGTGGCTTATCATTTCGGCTTTAGCTACTTTACGGTTGCGTTAA
TCTTTTTCACATTTGTCTTAATAGCCGCGACGTTTATCGATCTCGATACTATGCTGCTACCGGACCAATTAACATTACCA
TTAACTTGGGCTGGCATTGCGTTAGCATTAACAGAAATAAGCCCTGTTAGTCTACAAGACGCCGTAATTGGTGCGATTGC
CGGTTATTTGTGTCTTTGGTCAGTATATTGGGGGTTCAAACTGCTTACTGGTAAAGAAGGCATGGGTTACGGTGATTTTA
AATTGCTGGCTGCCCTTGGCGCTTGGCTAGGATGGCAATCATTACCAATGATCATCCTACTTTCTTCCGTCGTCGGTGTG
ATATTCGGGCTAGTCCAGTTACGACTACAAAAACAAGGTATAGAGAAAGCTTTCCCTTTCGGCCCATATTTAGCGATTGC
AGGATGGGTAAGCTTAATCAGGGGCGATCAAATTCTAAGTTGGTACTTAACGTCAATTTTAGGGGTGTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (135-244)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	88.927	100	0.889
pilD	Vibrio cholerae strain A1552	72.917	99.654	0.727
pilD	Acinetobacter baumannii D1279779	52.612	92.734	0.488
pilD	Acinetobacter nosocomialis M2	52.239	92.734	0.484
pilD	Neisseria gonorrhoeae MS11	47.101	95.502	0.45