Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Machinery gene
Locus tag   ABU188_RS00980 Genome accession   NZ_CP160327
Coordinates   228233..229465 (-) Length   410 a.a.
NCBI ID   WP_370469868.1    Uniprot ID   -
Organism   Snodgrassella alvi strain Acer10     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 223233..234465
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABU188_RS00945 (ABU188_12225) - 223780..224028 (-) 249 WP_100140843.1 BolA family protein -
  ABU188_RS00950 (ABU188_12230) - 224085..224840 (-) 756 WP_100140882.1 ABC transporter permease -
  ABU188_RS00955 (ABU188_12235) - 224843..225760 (-) 918 WP_370469866.1 ABC transporter ATP-binding protein -
  ABU188_RS00960 (ABU188_12240) yacG 225809..226006 (-) 198 WP_367421115.1 DNA gyrase inhibitor YacG -
  ABU188_RS00965 (ABU188_12245) zapD 226006..226758 (-) 753 WP_100140881.1 cell division protein ZapD -
  ABU188_RS00970 (ABU188_12250) coaE 226764..227378 (-) 615 WP_367421119.1 dephospho-CoA kinase -
  ABU188_RS00975 (ABU188_12255) pilD 227375..228226 (-) 852 WP_370469867.1 A24 family peptidase Machinery gene
  ABU188_RS00980 (ABU188_12260) pilG 228233..229465 (-) 1233 WP_370469868.1 type II secretion system F family protein Machinery gene
  ABU188_RS00985 (ABU188_12265) pilF 229515..231194 (-) 1680 WP_370469869.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ABU188_RS00990 (ABU188_12270) recJ 231394..233091 (-) 1698 WP_370469870.1 single-stranded-DNA-specific exonuclease RecJ -
  ABU188_RS00995 (ABU188_12275) - 233088..234062 (-) 975 WP_367421121.1 hypothetical protein -

Sequence

Protein


Download         Length: 410 a.a.        Molecular weight: 45361.42 Da        Isoelectric Point: 9.9601

>NTDB_id=1020456 ABU188_RS00980 WP_370469868.1 228233..229465(-) (pilG) [Snodgrassella alvi strain Acer10]
MNKPVAITKAKPSGTNFSFEGKNIKTEQIVRGEVVAKNEAEARAKLNRRQIRVIQITKVKKQRQKKISQADITVFTRQLS
TMMKSGLPMMQAFDIAAKGHSNRAMTQLLLEIRTDVEQGTSLAESFAKHPKYFDDFYCNLVRAGEAGGVLEGLLEKLAVY
KEKTQSIKKKVKSALTYPVVVVIVAIGLVFVMMMFVLPSFAKVYEGMGVALPWLTQVMMNISNFFVHYGIFILIALILGG
IGFYKWFQNSAELRKRFDHMLLKLPIFGQIVRKATIARWSRTTATLFAAGVPLVEVLDSVAGASGNIEYEEATQEIRSKV
NQGISLTSAMQATELFPNMVMQMASIGEESGSLDSMLNKAAEFYEDDVDTAVSQLSSLMEPIIMVVLGLIIGVILVAMYL
PMFNLGNAVG

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=1020456 ABU188_RS00980 WP_370469868.1 228233..229465(-) (pilG) [Snodgrassella alvi strain Acer10]
ATGAATAAACCAGTAGCTATAACTAAAGCCAAACCTTCTGGTACCAACTTCAGTTTTGAAGGCAAAAACATCAAAACTGA
GCAAATAGTACGCGGTGAAGTCGTTGCTAAAAACGAAGCAGAGGCTCGTGCCAAACTAAACCGGCGCCAAATCCGAGTTA
TTCAAATAACCAAAGTTAAAAAACAGCGTCAGAAAAAAATCAGTCAGGCAGATATCACTGTTTTTACGCGTCAGCTATCA
ACCATGATGAAATCCGGTTTACCGATGATGCAGGCGTTTGATATTGCCGCCAAAGGCCATTCCAATCGAGCAATGACCCA
GTTATTATTAGAAATCCGTACAGACGTTGAGCAAGGTACCTCTCTGGCTGAATCATTTGCCAAGCATCCAAAATATTTTG
ATGATTTTTATTGTAATCTAGTAAGAGCTGGTGAAGCAGGTGGTGTACTAGAAGGCTTACTTGAAAAATTAGCCGTTTAT
AAAGAAAAAACACAAAGTATCAAGAAAAAAGTTAAAAGTGCTTTAACTTATCCGGTTGTTGTTGTAATCGTGGCTATAGG
GCTGGTATTTGTCATGATGATGTTTGTTCTTCCATCCTTTGCAAAAGTGTATGAAGGTATGGGTGTAGCATTACCTTGGC
TAACCCAGGTAATGATGAATATTTCCAACTTTTTTGTACATTACGGTATATTTATTCTTATAGCCCTCATCCTCGGAGGA
ATAGGCTTCTACAAATGGTTTCAAAATTCGGCAGAGCTACGAAAACGATTTGATCATATGCTGCTGAAATTGCCTATTTT
CGGGCAAATTGTACGAAAAGCCACCATTGCACGATGGTCTCGTACAACTGCAACACTTTTTGCAGCCGGTGTGCCATTGG
TTGAAGTATTGGATTCTGTAGCGGGTGCTTCAGGTAATATCGAATACGAAGAAGCTACACAGGAAATTCGTTCCAAGGTT
AATCAAGGTATTTCTCTTACATCAGCTATGCAAGCCACAGAGTTATTTCCCAACATGGTAATGCAAATGGCATCAATTGG
AGAAGAATCCGGTTCACTGGATTCCATGTTGAATAAAGCTGCTGAATTTTATGAAGATGACGTCGATACTGCTGTATCTC
AATTATCTTCATTAATGGAACCAATCATTATGGTTGTTCTGGGTCTAATCATCGGGGTTATTTTGGTTGCCATGTATTTA
CCTATGTTTAACCTAGGCAATGCAGTAGGTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(75-198)

Type II secretion system (T2SS), protein F (T2SSF)

(279-401)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Neisseria gonorrhoeae MS11

66.667

95.854

0.639
  pilG Neisseria meningitidis 44/76-A

65.903

95.854

0.632
  pilC Legionella pneumophila strain ERS1305867

47.912

99.268

0.476
  pilC Acinetobacter baumannii D1279779

43.659

100

0.437
  pilC Acinetobacter baylyi ADP1

44.11

97.317

0.429
  pilC Pseudomonas stutzeri DSM 10701

42.607

97.317

0.415
  pilC Vibrio cholerae strain A1552

39.303

98.049

0.385
  pilC Vibrio campbellii strain DS40M4

36.973

98.293

0.363

Multiple sequence alignment