Detailed information NTG1020455

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ABU188_RS00975
• Genome accession: NZ_CP160327
• Coordinates: 227375..228226 (-)
• Length: 283 a.a.
• NCBI ID: WP_370469867.1
• Uniprot ID: -
• Organism: Snodgrassella alvi strain Acer10
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 222375..233226

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABU188_RS00940 (ABU188_12220)	murA	222480..223736 (-)	1257	WP_100151393.1	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	-
ABU188_RS00945 (ABU188_12225)	-	223780..224028 (-)	249	WP_100140843.1	BolA family protein	-
ABU188_RS00950 (ABU188_12230)	-	224085..224840 (-)	756	WP_100140882.1	ABC transporter permease	-
ABU188_RS00955 (ABU188_12235)	-	224843..225760 (-)	918	WP_370469866.1	ABC transporter ATP-binding protein	-
ABU188_RS00960 (ABU188_12240)	yacG	225809..226006 (-)	198	WP_367421115.1	DNA gyrase inhibitor YacG	-
ABU188_RS00965 (ABU188_12245)	zapD	226006..226758 (-)	753	WP_100140881.1	cell division protein ZapD	-
ABU188_RS00970 (ABU188_12250)	coaE	226764..227378 (-)	615	WP_367421119.1	dephospho-CoA kinase	-
ABU188_RS00975 (ABU188_12255)	pilD	227375..228226 (-)	852	WP_370469867.1	A24 family peptidase	Machinery gene
ABU188_RS00980 (ABU188_12260)	pilG	228233..229465 (-)	1233	WP_370469868.1	type II secretion system F family protein	Machinery gene
ABU188_RS00985 (ABU188_12265)	pilF	229515..231194 (-)	1680	WP_370469869.1	type IV-A pilus assembly ATPase PilB	Machinery gene
ABU188_RS00990 (ABU188_12270)	recJ	231394..233091 (-)	1698	WP_370469870.1	single-stranded-DNA-specific exonuclease RecJ	-

Sequence

Protein

• Length: 283 a.a.
• Molecular weight: 31195.20 Da
• Isoelectric Point: 7.9571

>NTDB_id=1020455 ABU188_RS00975 WP_370469867.1 227375..228226(-) (pilD) [Snodgrassella alvi strain Acer10]
MLSDTLFFSIIALISGLAVGSFLNVVIYRLPIMMERSWQAEARMALQLPAENFARFNLCIPPSACPHCQHKIRWWQNIPL
ISYLLLHGRCAACAKPISPRYFCVELLTGLAFAAVIWRYDVTPVAAGGLVLTAALITLTFIDADTQLLPDQITLPLLWLG
LLFNWYSEFVSLSAAIWGAVAGYMSLWSLFWLFKLITGKDGMGYGDFKLLAALGAWMGAAALPLIVFIAAIVGIIASLIL
KVARSQPMAFGPALAISGWIVWMANSQISQLIHWWLQLSGFDA

Nucleotide

• Length: 852 bp

>NTDB_id=1020455 ABU188_RS00975 WP_370469867.1 227375..228226(-) (pilD) [Snodgrassella alvi strain Acer10]
ATGTTATCAGATACACTGTTTTTCTCCATCATCGCATTAATATCAGGTTTAGCTGTAGGTAGCTTTCTGAACGTAGTCAT
CTATCGTCTGCCGATCATGATGGAACGCAGCTGGCAGGCTGAAGCACGAATGGCATTGCAATTACCGGCAGAAAATTTTG
CCCGTTTCAATCTTTGCATACCCCCGTCAGCCTGCCCTCATTGCCAGCATAAAATTCGCTGGTGGCAAAATATACCATTG
ATAAGCTATCTTCTCTTACATGGTCGTTGTGCTGCTTGTGCAAAACCGATTAGCCCTCGCTATTTCTGTGTCGAACTGCT
TACCGGACTAGCGTTTGCCGCAGTAATATGGCGCTATGATGTAACACCAGTCGCCGCCGGTGGTCTGGTTTTGACAGCTG
CGTTGATAACATTAACATTTATCGATGCTGATACTCAGCTCTTGCCAGATCAGATTACTTTGCCATTACTGTGGCTGGGA
TTACTGTTTAATTGGTATAGTGAATTTGTATCCTTATCTGCAGCTATATGGGGAGCAGTAGCAGGCTATATGAGCTTGTG
GTCACTGTTTTGGCTATTCAAGCTCATAACCGGAAAAGATGGCATGGGTTATGGTGATTTTAAACTGCTGGCTGCTCTAG
GCGCATGGATGGGTGCTGCTGCATTACCATTAATTGTATTTATAGCTGCTATTGTTGGCATCATTGCCTCTTTGATACTC
AAAGTTGCCCGCAGTCAGCCAATGGCTTTTGGCCCAGCTCTAGCCATCTCCGGCTGGATTGTTTGGATGGCCAACAGCCA
AATTAGCCAGCTCATTCACTGGTGGTTGCAACTTTCTGGATTCGATGCATGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (129-236)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (14-119)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Neisseria gonorrhoeae MS11	55.39	95.053	0.526
pilD	Acinetobacter baumannii D1279779	52.03	95.76	0.498
pilD	Acinetobacter nosocomialis M2	51.661	95.76	0.495
pilD	Vibrio cholerae strain A1552	49.097	97.88	0.481
pilD	Vibrio campbellii strain DS40M4	46.494	95.76	0.445