Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Machinery gene
Locus tag   ABUW22_RS03715 Genome accession   NZ_CP160326
Coordinates   838368..839600 (-) Length   410 a.a.
NCBI ID   WP_100151389.1    Uniprot ID   A0A2N9X9Z8
Organism   Snodgrassella alvi strain Acer01     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 833368..844600
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABUW22_RS03680 (ABUW22_08700) - 833914..834162 (-) 249 WP_100140843.1 BolA family protein -
  ABUW22_RS03685 (ABUW22_08705) - 834219..834974 (-) 756 WP_100140882.1 ABC transporter permease -
  ABUW22_RS03690 (ABUW22_08710) - 834977..835894 (-) 918 WP_100140842.1 ABC transporter ATP-binding protein -
  ABUW22_RS03695 (ABUW22_08715) yacG 835944..836141 (-) 198 WP_267392005.1 DNA gyrase inhibitor YacG -
  ABUW22_RS03700 (ABUW22_08720) zapD 836141..836893 (-) 753 WP_100140881.1 cell division protein ZapD -
  ABUW22_RS03705 (ABUW22_08725) coaE 836899..837513 (-) 615 WP_367417838.1 dephospho-CoA kinase -
  ABUW22_RS03710 (ABUW22_08730) pilD 837510..838361 (-) 852 WP_367417839.1 A24 family peptidase Machinery gene
  ABUW22_RS03715 (ABUW22_08735) pilG 838368..839600 (-) 1233 WP_100151389.1 type II secretion system F family protein Machinery gene
  ABUW22_RS03720 (ABUW22_08740) pilF 839647..841326 (-) 1680 WP_267408994.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ABUW22_RS03725 (ABUW22_08745) recJ 841526..843223 (-) 1698 WP_370387724.1 single-stranded-DNA-specific exonuclease RecJ -
  ABUW22_RS03730 (ABUW22_08750) - 843220..844194 (-) 975 WP_367417840.1 hypothetical protein -

Sequence

Protein


Download         Length: 410 a.a.        Molecular weight: 45133.29 Da        Isoelectric Point: 9.9915

>NTDB_id=1020436 ABUW22_RS03715 WP_100151389.1 838368..839600(-) (pilG) [Snodgrassella alvi strain Acer01]
MNKPVAVSKAKSTGISYSFEGKNIKTEQIVRGEVVAKDEAEARAKLNRRQIRVIQISKVKKQRQKKISPADITVFTRQLS
TMMKSGLPMMQAFDIAAKGHSNPAMTQMLMQIRSDVEQGTSLADSFAKHPKYFDRFYCNLVRAGETGGVLEAILDKLAVY
KEKTQGIKKKVKSALTYPVVVVVVAIALVIVMMMFVLPSFGKVYEGMGVPLPGLTQFMMNISNFFVHFGVFIIIALIAGV
IGLIKWYQNSDDLKKRFDYMLLKMPIFGQIVRKATIARWARTTATLFAAGVPLVEVLDSVAGAAGNIRYEEATQEIRAKV
NQGISLTSAMQATELFPNMVMQMASIGEESGSLDDMLNKSAEFYEEDVDTAVSQLSSLMEPIIMVVLGLIVGVILVAMYL
PLFNIGNAVG

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=1020436 ABUW22_RS03715 WP_100151389.1 838368..839600(-) (pilG) [Snodgrassella alvi strain Acer01]
ATGAACAAACCAGTAGCAGTATCCAAAGCTAAATCTACCGGCATCAGCTACAGCTTTGAAGGAAAAAACATCAAAACTGA
GCAGATTGTACGCGGCGAAGTAGTAGCAAAAGATGAGGCAGAAGCCCGTGCCAAACTTAACCGAAGACAGATTCGTGTCA
TTCAGATTAGCAAAGTCAAAAAACAGCGTCAGAAAAAAATCAGTCCGGCGGATATAACAGTCTTTACTCGACAATTATCA
ACCATGATGAAATCCGGTTTACCGATGATGCAGGCTTTTGATATCGCAGCCAAAGGTCACTCAAACCCTGCTATGACCCA
AATGCTGATGCAAATCCGTTCTGATGTTGAGCAGGGTACATCATTAGCTGATTCTTTTGCCAAACATCCAAAGTATTTTG
ATCGATTTTATTGCAATCTGGTACGTGCAGGCGAAACAGGCGGTGTATTGGAAGCCATATTAGATAAACTCGCCGTATAC
AAAGAAAAAACTCAAGGAATTAAGAAAAAAGTTAAAAGTGCTTTGACCTATCCGGTAGTAGTGGTAGTTGTCGCAATTGC
TCTGGTAATCGTCATGATGATGTTTGTTTTACCATCATTCGGTAAGGTTTACGAAGGTATGGGCGTTCCTCTGCCAGGGC
TTACACAATTCATGATGAATATTTCTAATTTCTTTGTCCACTTTGGTGTATTTATTATCATTGCACTCATTGCAGGTGTA
ATTGGACTAATAAAATGGTATCAGAACTCAGATGATTTGAAAAAACGTTTTGATTACATGTTATTGAAAATGCCCATTTT
TGGCCAAATCGTACGTAAAGCCACAATTGCCCGCTGGGCGCGCACAACAGCAACCTTGTTTGCTGCCGGAGTCCCCTTAG
TAGAAGTACTTGACTCAGTTGCCGGAGCAGCGGGCAATATCAGATATGAAGAAGCGACACAGGAAATTCGGGCCAAGGTT
AATCAGGGTATCTCCCTCACCTCTGCCATGCAGGCTACTGAATTATTTCCCAATATGGTGATGCAAATGGCCTCTATTGG
CGAAGAATCCGGATCACTTGATGATATGTTAAATAAATCAGCCGAATTTTATGAAGAAGACGTAGATACTGCTGTTTCAC
AGCTATCCTCTTTGATGGAACCCATTATCATGGTAGTACTCGGTTTGATCGTCGGTGTTATTCTGGTTGCTATGTATTTA
CCACTCTTCAACATCGGTAATGCAGTAGGTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(75-198)

Type II secretion system (T2SS), protein F (T2SSF)

(279-401)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2N9X9Z8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Neisseria gonorrhoeae MS11

65.649

95.854

0.629
  pilG Neisseria meningitidis 44/76-A

64.885

95.854

0.622
  pilC Legionella pneumophila strain ERS1305867

47.25

97.561

0.461
  pilC Acinetobacter baumannii D1279779

43.358

97.317

0.422
  pilC Acinetobacter baylyi ADP1

42.714

97.073

0.415
  pilC Pseudomonas stutzeri DSM 10701

41.604

97.317

0.405
  pilC Vibrio cholerae strain A1552

38.557

98.049

0.378
  pilC Thermus thermophilus HB27

37

97.561

0.361

Multiple sequence alignment