Detailed information NTG1020435

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ABUW22_RS03710
• Genome accession: NZ_CP160326
• Coordinates: 837510..838361 (-)
• Length: 283 a.a.
• NCBI ID: WP_367417839.1
• Uniprot ID: -
• Organism: Snodgrassella alvi strain Acer01
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 832510..843361

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABUW22_RS03675 (ABUW22_08695)	murA	832614..833870 (-)	1257	WP_267392003.1	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	-
ABUW22_RS03680 (ABUW22_08700)	-	833914..834162 (-)	249	WP_100140843.1	BolA family protein	-
ABUW22_RS03685 (ABUW22_08705)	-	834219..834974 (-)	756	WP_100140882.1	ABC transporter permease	-
ABUW22_RS03690 (ABUW22_08710)	-	834977..835894 (-)	918	WP_100140842.1	ABC transporter ATP-binding protein	-
ABUW22_RS03695 (ABUW22_08715)	yacG	835944..836141 (-)	198	WP_267392005.1	DNA gyrase inhibitor YacG	-
ABUW22_RS03700 (ABUW22_08720)	zapD	836141..836893 (-)	753	WP_100140881.1	cell division protein ZapD	-
ABUW22_RS03705 (ABUW22_08725)	coaE	836899..837513 (-)	615	WP_367417838.1	dephospho-CoA kinase	-
ABUW22_RS03710 (ABUW22_08730)	pilD	837510..838361 (-)	852	WP_367417839.1	A24 family peptidase	Machinery gene
ABUW22_RS03715 (ABUW22_08735)	pilG	838368..839600 (-)	1233	WP_100151389.1	type II secretion system F family protein	Machinery gene
ABUW22_RS03720 (ABUW22_08740)	pilF	839647..841326 (-)	1680	WP_267408994.1	type IV-A pilus assembly ATPase PilB	Machinery gene
ABUW22_RS03725 (ABUW22_08745)	recJ	841526..843223 (-)	1698	WP_370387724.1	single-stranded-DNA-specific exonuclease RecJ	-

Sequence

Protein

• Length: 283 a.a.
• Molecular weight: 31181.17 Da
• Isoelectric Point: 7.9571

>NTDB_id=1020435 ABUW22_RS03710 WP_367417839.1 837510..838361(-) (pilD) [Snodgrassella alvi strain Acer01]
MLSDTLFFSIIALITGLAVGSFLNVVIYRLPIMMERSWQAEARMALQLPAENFARFNLCVPPSACPHCQHKIRWWQNIPL
ISYLILHGRCAACAKPISPRYFCVELLTGLAFAAVVWRYDVTPVAAGGLVLTAALITLTFIDADTQLLPDQITLPLLWLG
LLFNWYSEFVSLSAAIWGAVAGYMSLWSLFWLFKLITGKDGMGYGDFKLLAALGAWMGAAALPLIVFIAAIVGIIASLIL
KVARSQPMAFGPALAISGWIVWMANSQISQLIHWWLQLSGFDA

Nucleotide

• Length: 852 bp

>NTDB_id=1020435 ABUW22_RS03710 WP_367417839.1 837510..838361(-) (pilD) [Snodgrassella alvi strain Acer01]
ATGTTATCAGATACACTGTTTTTCTCCATCATCGCATTAATAACAGGTTTAGCTGTAGGCAGCTTTCTGAACGTAGTCAT
CTACCGTCTGCCGATCATGATGGAACGCAGCTGGCAGGCTGAAGCACGAATGGCATTGCAATTACCGGCAGAAAATTTTG
CCCGTTTCAATCTTTGCGTACCCCCGTCAGCCTGCCCTCATTGCCAGCATAAAATTCGCTGGTGGCAAAATATACCATTG
ATAAGCTATCTTATCTTACATGGTCGTTGTGCTGCTTGTGCAAAACCGATTAGCCCTCGCTATTTCTGTGTTGAACTGCT
TACCGGACTAGCGTTTGCCGCAGTAGTATGGCGCTATGATGTAACACCAGTTGCCGCCGGTGGTCTGGTTTTGACAGCTG
CGTTGATAACATTAACATTTATCGATGCTGATACTCAGCTCTTGCCAGATCAGATTACTCTACCATTACTGTGGCTGGGA
TTACTGTTTAATTGGTATAGTGAATTTGTATCCTTATCTGCAGCTATATGGGGAGCAGTAGCAGGCTATATGAGCTTGTG
GTCACTGTTTTGGCTATTCAAGCTCATAACCGGAAAAGATGGCATGGGTTATGGTGATTTTAAACTGCTGGCTGCTCTAG
GCGCATGGATGGGTGCTGCTGCATTGCCATTAATTGTATTTATAGCTGCTATTGTTGGCATCATTGCCTCTTTGATACTC
AAAGTTGCCCGCAGTCAGCCAATGGCTTTTGGCCCGGCTCTAGCCATCTCCGGCTGGATTGTTTGGATGGCCAACAGCCA
AATTAGCCAGCTCATTCACTGGTGGTTGCAACTTTCTGGATTCGATGCATGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (129-236)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (14-119)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Neisseria gonorrhoeae MS11	55.019	95.053	0.523
pilD	Acinetobacter baumannii D1279779	52.03	95.76	0.498
pilD	Acinetobacter nosocomialis M2	51.661	95.76	0.495
pilD	Vibrio cholerae strain A1552	49.097	97.88	0.481
pilD	Vibrio campbellii strain DS40M4	46.494	95.76	0.445