Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   AB0R71_RS08745 Genome accession   NZ_CP160210
Coordinates   1724607..1725857 (+) Length   416 a.a.
NCBI ID   WP_220007163.1    Uniprot ID   -
Organism   Bacillus velezensis strain JM907     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1719607..1730857
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB0R71_RS08715 (AB0R71_08725) yfmH 1719694..1720980 (+) 1287 WP_015239876.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  AB0R71_RS08720 (AB0R71_08730) ymfI 1721040..1721768 (+) 729 WP_015239877.1 elongation factor P 5-aminopentanone reductase -
  AB0R71_RS08725 (AB0R71_08735) - 1721844..1722101 (+) 258 WP_003154150.1 DUF3243 domain-containing protein -
  AB0R71_RS08730 (AB0R71_08740) - 1722229..1723020 (+) 792 WP_007409819.1 YmfK family protein -
  AB0R71_RS08735 (AB0R71_08745) - 1723039..1723935 (+) 897 WP_160241975.1 RodZ domain-containing protein -
  AB0R71_RS08740 (AB0R71_08750) pgsA 1724008..1724589 (+) 582 WP_007409821.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  AB0R71_RS08745 (AB0R71_08755) cinA 1724607..1725857 (+) 1251 WP_220007163.1 competence/damage-inducible protein A Machinery gene
  AB0R71_RS08750 (AB0R71_08760) recA 1726028..1727071 (+) 1044 WP_003154145.1 recombinase RecA Machinery gene
  AB0R71_RS08755 (AB0R71_08765) - 1727239..1728420 (+) 1182 WP_007409824.1 serine hydrolase -
  AB0R71_RS08760 (AB0R71_08770) rny 1728713..1730272 (+) 1560 WP_003154140.1 ribonuclease Y -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45072.32 Da        Isoelectric Point: 5.1493

>NTDB_id=1018932 AB0R71_RS08745 WP_220007163.1 1724607..1725857(+) (cinA) [Bacillus velezensis strain JM907]
MEIAKKAEIIAVGSELLLGQIANTNAQFISKELAEIGVNVFYHTAVGDNPERLKQVIRIAEERSDLIIFSGGLGPTKDDL
TKETIANTLGRPLVLNDEAFRSIEEYFAKTKRTMSPNNRKQALVIEGSDVLANHFGMAPGMLAEHGSRLYMLLPGPPSEL
RPMFENEAKPLLLKKLGSNEKIVSTVLRFFGIGESQLEADLEDIIDAQTNPTIAPLAADGEVTLRLTAKHADEKETERLL
KETEAAILERVGEFFYGYDDTSLVKELSKACRQNGITISSAESFTGGLFSEWVTDLSGASQLFAGGVVCYSDSVKQHVLG
VKAETLAESGAVSKECAKELAAGVRKLTGSDIGISFTGVAGPDPQEGHAPGRVFIGISAEGKEEVHEFNFAGSRTGIRKR
AAKYGYHLILKMLDQK

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=1018932 AB0R71_RS08745 WP_220007163.1 1724607..1725857(+) (cinA) [Bacillus velezensis strain JM907]
ATGGAAATAGCAAAAAAAGCAGAAATCATTGCAGTCGGCTCGGAGCTTCTGCTCGGCCAGATCGCCAATACGAACGCGCA
GTTTATCAGTAAAGAGCTGGCGGAAATCGGTGTAAACGTGTTTTATCATACCGCTGTCGGTGACAATCCGGAGCGGCTTA
AGCAAGTCATCCGCATTGCCGAAGAGCGCTCAGACCTGATTATTTTTTCAGGCGGCCTCGGACCGACCAAGGACGATTTG
ACGAAAGAAACCATTGCAAACACACTGGGGCGCCCGCTCGTTCTGAATGACGAAGCGTTCCGGTCGATCGAAGAATATTT
CGCGAAAACAAAACGGACCATGTCGCCGAATAACCGCAAACAGGCGCTCGTCATTGAGGGCTCAGACGTTTTGGCGAATC
ATTTCGGCATGGCGCCGGGAATGCTTGCAGAGCACGGCTCAAGGCTTTATATGCTGCTTCCCGGGCCGCCGAGCGAGCTG
CGTCCGATGTTTGAAAATGAAGCGAAGCCGCTGCTTCTTAAAAAGCTCGGTTCTAATGAGAAAATCGTTTCAACCGTGCT
GCGGTTTTTCGGAATCGGTGAATCCCAGCTTGAAGCTGATTTAGAAGATATCATTGATGCGCAGACGAACCCGACGATTG
CGCCGCTTGCCGCTGACGGAGAGGTCACGCTGCGTTTAACGGCGAAACATGCCGACGAAAAAGAAACAGAACGGCTTTTA
AAAGAAACGGAAGCCGCCATTTTAGAACGTGTCGGTGAATTTTTCTACGGATATGATGATACGTCTCTGGTGAAGGAGCT
TTCAAAAGCATGCAGACAAAACGGAATTACGATTTCCTCTGCCGAAAGCTTTACAGGCGGCCTGTTTTCAGAGTGGGTGA
CTGATTTAAGCGGTGCGTCTCAACTATTTGCAGGGGGCGTTGTCTGTTATTCCGACAGCGTGAAACAGCATGTGCTCGGC
GTGAAAGCTGAGACGCTCGCAGAAAGCGGAGCGGTCAGCAAAGAGTGTGCGAAAGAGCTTGCAGCCGGTGTGAGAAAGCT
GACCGGAAGCGATATCGGCATCAGCTTTACCGGGGTTGCGGGTCCCGACCCGCAGGAAGGGCATGCGCCGGGCCGCGTCT
TTATCGGCATTTCGGCGGAAGGAAAAGAAGAGGTGCACGAATTTAACTTTGCCGGCTCAAGAACCGGAATCAGAAAGCGC
GCCGCTAAATACGGCTACCATCTCATTTTGAAAATGCTGGATCAAAAATAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(184-257)

Competence-damaged protein (CinA)

(261-413)

Probable molybdopterin binding domain (MoCF_biosynth)

(9-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

90.144

100

0.901
  cinA Streptococcus mitis NCTC 12261

47.847

100

0.481
  cinA Streptococcus mitis SK321

47.368

100

0.476
  cinA Streptococcus pneumoniae TIGR4

46.89

100

0.471
  cinA Streptococcus pneumoniae R6

46.89

100

0.471
  cinA Streptococcus pneumoniae Rx1

46.89

100

0.471
  cinA Streptococcus pneumoniae D39

46.651

100

0.469
  cinA Streptococcus mutans UA159

46.489

99.279

0.462
  cinA Streptococcus suis isolate S10

39.709

99.279

0.394

Multiple sequence alignment