Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   DQL69_RS00260 Genome accession   NZ_LS483345
Coordinates   33560..34315 (+) Length   251 a.a.
NCBI ID   WP_111690693.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain NCTC8231     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 28560..39315
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL69_RS09365 - 29573..29779 (-) 207 Protein_14 hypothetical protein -
  DQL69_RS00250 (NCTC8231_00049) pcsB 30963..32159 (+) 1197 WP_111690692.1 peptidoglycan hydrolase PcsB -
  DQL69_RS00255 (NCTC8231_00050) - 32412..33374 (+) 963 WP_009880326.1 ribose-phosphate diphosphokinase -
  DQL69_RS00260 (NCTC8231_00051) recO 33560..34315 (+) 756 WP_111690693.1 DNA repair protein RecO Machinery gene
  DQL69_RS00265 (NCTC8231_00052) plsX 34418..35425 (+) 1008 WP_047235602.1 phosphate acyltransferase PlsX -
  DQL69_RS00270 (NCTC8231_00053) - 35418..35660 (+) 243 WP_002986713.1 phosphopantetheine-binding protein -
  DQL69_RS00275 (NCTC8231_00054) purC 35812..36516 (+) 705 WP_002987701.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -

Sequence

Protein


Download         Length: 251 a.a.        Molecular weight: 29544.04 Da        Isoelectric Point: 7.1582

>NTDB_id=1018933 DQL69_RS00260 WP_111690693.1 33560..34315(+) (recO) [Streptococcus pyogenes strain NCTC8231]
MQLTESLGIVLFNRNYREDDKLVKIFTEVAGKQMFFVKHISRSKMSSIIQPLTIADFIFKLNDTGLSYVVDYSNVNTYRY
INNDIFRLAYASYVLALADAVIADNESDSHLFTFLKKTLDLMEEGLDYEILTNIFEIQILDRFGISLNFHECAICHRTDL
PLDFSHRFSAVLCSEHYYKDNRRNHLDPNVIYLLSRFQKITFDNLRTISLNKDIKKKLRQFIDELYHDYVGIKLKSKTFI
DNLVKWGDIMK

Nucleotide


Download         Length: 756 bp        

>NTDB_id=1018933 DQL69_RS00260 WP_111690693.1 33560..34315(+) (recO) [Streptococcus pyogenes strain NCTC8231]
ATGCAACTAACAGAATCACTAGGCATTGTTCTTTTTAATAGGAATTATCGAGAAGATGATAAATTAGTCAAAATATTTAC
TGAAGTAGCAGGTAAGCAGATGTTTTTCGTGAAACATATTAGTCGTTCCAAAATGTCCTCAATCATTCAACCACTAACGA
TTGCTGATTTTATTTTCAAGTTAAATGATACAGGCTTGTCTTATGTTGTTGACTATAGTAACGTTAACACTTATCGGTAT
ATTAATAATGATATTTTTCGATTAGCCTATGCTAGTTATGTCTTAGCATTAGCTGATGCTGTGATTGCAGATAATGAATC
AGATTCGCATTTGTTTACGTTTTTGAAAAAAACACTTGATTTGATGGAAGAGGGTCTAGATTATGAAATTTTGACAAATA
TTTTTGAAATTCAGATATTAGATCGTTTTGGTATTAGTCTAAACTTTCATGAGTGTGCCATTTGTCATCGCACTGATTTA
CCGCTTGATTTTTCCCATCGTTTTTCAGCTGTACTTTGTTCTGAACATTATTACAAAGACAACCGACGTAATCATTTAGA
TCCAAATGTTATCTACTTGTTGAGTCGATTTCAAAAAATCACATTTGATAATTTGAGAACTATTTCATTGAATAAAGACA
TCAAAAAGAAGCTTCGTCAGTTCATTGATGAGTTGTATCACGACTATGTAGGAATCAAATTAAAAAGTAAAACATTCATT
GATAATTTAGTTAAGTGGGGAGATATTATGAAATGA

Domains

Predicted by InterProScan.

Recombination protein O C terminal (RecO_C)

(83-237)

Recombination protein O N terminal (RecO_N)

(1-73)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

60.159

100

0.602

Multiple sequence alignment