Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | ABZU06_RS03685 | Genome accession | NZ_CP160081 |
| Coordinates | 766628..767083 (+) | Length | 151 a.a. |
| NCBI ID | WP_006729287.1 | Uniprot ID | - |
| Organism | Lactobacillus iners strain E3_1733.1310.1_CBA1 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 761628..772083
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ABZU06_RS03670 (ABZU06_03670) | gyrB | 761700..763661 (+) | 1962 | WP_006734741.1 | DNA topoisomerase (ATP-hydrolyzing) subunit B | - |
| ABZU06_RS03675 (ABZU06_03675) | gyrA | 763671..766118 (+) | 2448 | WP_006738038.1 | DNA gyrase subunit A | - |
| ABZU06_RS03680 (ABZU06_03680) | rpsF | 766296..766592 (+) | 297 | WP_006729288.1 | 30S ribosomal protein S6 | - |
| ABZU06_RS03685 (ABZU06_03685) | ssb | 766628..767083 (+) | 456 | WP_006729287.1 | single-stranded DNA-binding protein | Machinery gene |
| ABZU06_RS03690 (ABZU06_03690) | rpsR | 767112..767348 (+) | 237 | WP_006729286.1 | 30S ribosomal protein S18 | - |
| ABZU06_RS03695 (ABZU06_03695) | - | 767516..769531 (+) | 2016 | WP_006732072.1 | DHH family phosphoesterase | - |
| ABZU06_RS03700 (ABZU06_03700) | rplI | 769547..770002 (+) | 456 | WP_391484170.1 | 50S ribosomal protein L9 | - |
| ABZU06_RS03705 (ABZU06_03705) | dnaB | 770008..771381 (+) | 1374 | WP_006730827.1 | replicative DNA helicase | - |
Sequence
Protein
Download Length: 151 a.a. Molecular weight: 16896.68 Da Isoelectric Point: 4.6797
>NTDB_id=1017771 ABZU06_RS03685 WP_006729287.1 766628..767083(+) (ssb) [Lactobacillus iners strain E3_1733.1310.1_CBA1]
MINNVVLVGRLTRDPDLRTTESGISVATFTLAVDRQFSNSQGEREADFINCVVWRKAAENLANFTSKGSLIGVQGRIQTR
SYDNKEGQRVYVTEVVVDSFSFLESRRSRENKPVASNNFSTTNNVPTEEPKQDPFADTGKTIEISEDDLPF
MINNVVLVGRLTRDPDLRTTESGISVATFTLAVDRQFSNSQGEREADFINCVVWRKAAENLANFTSKGSLIGVQGRIQTR
SYDNKEGQRVYVTEVVVDSFSFLESRRSRENKPVASNNFSTTNNVPTEEPKQDPFADTGKTIEISEDDLPF
Nucleotide
Download Length: 456 bp
>NTDB_id=1017771 ABZU06_RS03685 WP_006729287.1 766628..767083(+) (ssb) [Lactobacillus iners strain E3_1733.1310.1_CBA1]
ATGATTAATAATGTTGTACTCGTTGGTCGTTTAACACGTGATCCTGATTTGCGTACTACTGAAAGTGGAATTTCAGTTGC
TACCTTTACTTTGGCAGTTGATCGTCAATTTTCTAATAGTCAAGGTGAGCGAGAAGCTGATTTTATAAATTGCGTAGTTT
GGCGTAAAGCTGCTGAGAATTTAGCAAACTTTACTTCAAAAGGTTCGCTTATTGGTGTTCAGGGACGTATTCAGACAAGA
AGCTATGATAACAAAGAAGGTCAACGTGTATACGTTACGGAAGTAGTTGTTGATAGTTTTTCATTTTTAGAATCACGTCG
TAGTCGCGAAAATAAACCAGTAGCAAGCAATAATTTCAGCACTACAAATAATGTACCTACTGAGGAACCTAAGCAGGATC
CTTTTGCAGATACAGGTAAGACGATAGAAATTTCAGAAGACGATTTACCGTTTTAA
ATGATTAATAATGTTGTACTCGTTGGTCGTTTAACACGTGATCCTGATTTGCGTACTACTGAAAGTGGAATTTCAGTTGC
TACCTTTACTTTGGCAGTTGATCGTCAATTTTCTAATAGTCAAGGTGAGCGAGAAGCTGATTTTATAAATTGCGTAGTTT
GGCGTAAAGCTGCTGAGAATTTAGCAAACTTTACTTCAAAAGGTTCGCTTATTGGTGTTCAGGGACGTATTCAGACAAGA
AGCTATGATAACAAAGAAGGTCAACGTGTATACGTTACGGAAGTAGTTGTTGATAGTTTTTCATTTTTAGAATCACGTCG
TAGTCGCGAAAATAAACCAGTAGCAAGCAATAATTTCAGCACTACAAATAATGTACCTACTGAGGAACCTAAGCAGGATC
CTTTTGCAGATACAGGTAAGACGATAGAAATTTCAGAAGACGATTTACCGTTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
59.412 |
100 |
0.669 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
50.867 |
100 |
0.583 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
60.377 |
70.199 |
0.424 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
51.376 |
72.185 |
0.371 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
51.376 |
72.185 |
0.371 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
50.459 |
72.185 |
0.364 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
50.459 |
72.185 |
0.364 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
50.459 |
72.185 |
0.364 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
50.459 |
72.185 |
0.364 |
| ssbB/cilA | Streptococcus mitis SK321 |
50.459 |
72.185 |
0.364 |