Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | ABZU18_RS04865 | Genome accession | NZ_CP160080 |
| Coordinates | 1000741..1001196 (+) | Length | 151 a.a. |
| NCBI ID | WP_006729287.1 | Uniprot ID | - |
| Organism | Lactobacillus iners strain UP11_143_D | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 995741..1006196
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ABZU18_RS04850 (ABZU18_04855) | gyrB | 995813..997774 (+) | 1962 | WP_006729290.1 | DNA topoisomerase (ATP-hydrolyzing) subunit B | - |
| ABZU18_RS04855 (ABZU18_04860) | gyrA | 997784..1000231 (+) | 2448 | WP_006735214.1 | DNA gyrase subunit A | - |
| ABZU18_RS04860 (ABZU18_04865) | rpsF | 1000409..1000705 (+) | 297 | WP_006729288.1 | 30S ribosomal protein S6 | - |
| ABZU18_RS04865 (ABZU18_04870) | ssb | 1000741..1001196 (+) | 456 | WP_006729287.1 | single-stranded DNA-binding protein | Machinery gene |
| ABZU18_RS04870 (ABZU18_04875) | rpsR | 1001225..1001461 (+) | 237 | WP_006729286.1 | 30S ribosomal protein S18 | - |
| ABZU18_RS04875 (ABZU18_04880) | - | 1001629..1003644 (+) | 2016 | WP_006731401.1 | DHH family phosphoesterase | - |
| ABZU18_RS04880 (ABZU18_04885) | rplI | 1003660..1004115 (+) | 456 | WP_006729284.1 | 50S ribosomal protein L9 | - |
| ABZU18_RS04885 (ABZU18_04890) | dnaB | 1004121..1005494 (+) | 1374 | WP_006737492.1 | replicative DNA helicase | - |
Sequence
Protein
Download Length: 151 a.a. Molecular weight: 16896.68 Da Isoelectric Point: 4.6797
>NTDB_id=1017758 ABZU18_RS04865 WP_006729287.1 1000741..1001196(+) (ssb) [Lactobacillus iners strain UP11_143_D]
MINNVVLVGRLTRDPDLRTTESGISVATFTLAVDRQFSNSQGEREADFINCVVWRKAAENLANFTSKGSLIGVQGRIQTR
SYDNKEGQRVYVTEVVVDSFSFLESRRSRENKPVASNNFSTTNNVPTEEPKQDPFADTGKTIEISEDDLPF
MINNVVLVGRLTRDPDLRTTESGISVATFTLAVDRQFSNSQGEREADFINCVVWRKAAENLANFTSKGSLIGVQGRIQTR
SYDNKEGQRVYVTEVVVDSFSFLESRRSRENKPVASNNFSTTNNVPTEEPKQDPFADTGKTIEISEDDLPF
Nucleotide
Download Length: 456 bp
>NTDB_id=1017758 ABZU18_RS04865 WP_006729287.1 1000741..1001196(+) (ssb) [Lactobacillus iners strain UP11_143_D]
ATGATTAATAATGTTGTACTCGTTGGTCGTTTAACACGTGATCCTGATTTGCGTACTACTGAAAGTGGAATTTCAGTTGC
TACCTTTACTTTGGCAGTTGATCGTCAATTTTCTAATAGTCAAGGTGAGCGAGAAGCTGATTTTATAAATTGCGTAGTTT
GGCGTAAAGCTGCTGAGAATTTAGCAAACTTTACTTCAAAAGGTTCGCTTATTGGTGTTCAGGGTCGTATTCAGACAAGA
AGCTATGATAACAAAGAAGGGCAACGTGTATACGTTACGGAAGTAGTTGTTGATAGTTTTTCATTTTTAGAATCACGTCG
TAGTCGCGAAAATAAACCAGTAGCAAGCAATAATTTCAGCACTACAAATAATGTACCTACTGAGGAACCTAAGCAGGATC
CTTTCGCAGATACAGGTAAGACTATAGAAATTTCAGAAGATGATTTACCGTTTTAA
ATGATTAATAATGTTGTACTCGTTGGTCGTTTAACACGTGATCCTGATTTGCGTACTACTGAAAGTGGAATTTCAGTTGC
TACCTTTACTTTGGCAGTTGATCGTCAATTTTCTAATAGTCAAGGTGAGCGAGAAGCTGATTTTATAAATTGCGTAGTTT
GGCGTAAAGCTGCTGAGAATTTAGCAAACTTTACTTCAAAAGGTTCGCTTATTGGTGTTCAGGGTCGTATTCAGACAAGA
AGCTATGATAACAAAGAAGGGCAACGTGTATACGTTACGGAAGTAGTTGTTGATAGTTTTTCATTTTTAGAATCACGTCG
TAGTCGCGAAAATAAACCAGTAGCAAGCAATAATTTCAGCACTACAAATAATGTACCTACTGAGGAACCTAAGCAGGATC
CTTTCGCAGATACAGGTAAGACTATAGAAATTTCAGAAGATGATTTACCGTTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
59.412 |
100 |
0.669 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
50.867 |
100 |
0.583 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
60.377 |
70.199 |
0.424 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
51.376 |
72.185 |
0.371 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
51.376 |
72.185 |
0.371 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
50.459 |
72.185 |
0.364 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
50.459 |
72.185 |
0.364 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
50.459 |
72.185 |
0.364 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
50.459 |
72.185 |
0.364 |
| ssbB/cilA | Streptococcus mitis SK321 |
50.459 |
72.185 |
0.364 |