Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Machinery gene
Locus tag   ABX014_RS03940 Genome accession   NZ_CP160070
Coordinates   850472..851704 (+) Length   410 a.a.
NCBI ID   WP_037476130.1    Uniprot ID   -
Organism   Snodgrassella alvi strain Amel05     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 845472..856704
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABX014_RS03925 (ABX014_13950) - 845876..846850 (+) 975 WP_370578342.1 hypothetical protein -
  ABX014_RS03930 (ABX014_13945) recJ 846847..848544 (+) 1698 WP_367435912.1 single-stranded-DNA-specific exonuclease RecJ -
  ABX014_RS03935 (ABX014_13940) pilF 848744..850423 (+) 1680 WP_370578343.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ABX014_RS03940 (ABX014_13935) pilG 850472..851704 (+) 1233 WP_037476130.1 type II secretion system F family protein Machinery gene
  ABX014_RS03945 (ABX014_13930) pilD 851711..852562 (+) 852 WP_370578344.1 A24 family peptidase Machinery gene
  ABX014_RS03950 (ABX014_20610) coaE 852559..853173 (+) 615 WP_370578345.1 dephospho-CoA kinase -
  ABX014_RS03955 (ABX014_20615) zapD 853179..853931 (+) 753 WP_037476209.1 cell division protein ZapD -
  ABX014_RS03960 (ABX014_13900) yacG 853931..854128 (+) 198 WP_025329859.1 DNA gyrase inhibitor YacG -
  ABX014_RS03965 (ABX014_13895) - 854175..855095 (+) 921 WP_037476124.1 ABC transporter ATP-binding protein -
  ABX014_RS03970 (ABX014_13890) - 855092..855853 (+) 762 WP_037476122.1 ABC transporter permease -
  ABX014_RS03975 (ABX014_13885) - 855908..856156 (+) 249 WP_025329856.1 BolA family protein -

Sequence

Protein


Download         Length: 410 a.a.        Molecular weight: 45236.40 Da        Isoelectric Point: 9.9509

>NTDB_id=1017536 ABX014_RS03940 WP_037476130.1 850472..851704(+) (pilG) [Snodgrassella alvi strain Amel05]
MNKPVAVSKTKPSGTSFSFEGKNLKTEQIVRGEVTAKNEAEARSKLKRRQIRVIQITKVKKQRQKKISQADITVFTRQLS
TMMKSGLPLMQAFDIAAKGHSNRSMTQLLMEIRSDVEQGTSLADSFAKHPKYFDDFYCNLISAGEAGGVLEALLDKLAVY
KEKTQSIKKKVKSALTYPVVVVIVAVVLVIVMMMFVLPSFAKVYQGMGVALPWLTQVMMNISDFFVRYGIFIVMAIVLGA
IGFYKWFQSSADLRKRFDHMLLKLPIFGPIVRKATIARWARTTATLFAAGVPLVEVLDSVAGAAGNIEYEEATQEIRAKV
NQGISLTSAMQATELFPNMVMQMASIGEESGSLDDMLNKAAELYEDDVDIAVSQLSSLMEPIIMVVLGLIIGVILVAMYL
PMFNMGNAIG

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=1017536 ABX014_RS03940 WP_037476130.1 850472..851704(+) (pilG) [Snodgrassella alvi strain Amel05]
ATGAATAAACCAGTAGCAGTATCCAAAACCAAACCCTCTGGTACCAGTTTTAGTTTTGAAGGTAAAAACCTTAAAACCGA
GCAGATCGTTCGCGGAGAGGTGACTGCCAAAAATGAAGCAGAAGCCCGATCTAAACTAAAACGTCGGCAGATACGTGTCA
TTCAAATTACCAAGGTCAAAAAACAGCGTCAGAAAAAAATCAGTCAGGCGGATATTACTGTTTTTACCCGACAACTATCC
ACCATGATGAAATCCGGGTTACCTTTAATGCAAGCATTTGATATTGCAGCAAAAGGTCACTCAAATCGTTCAATGACCCA
ACTATTGATGGAAATTCGTTCAGATGTTGAACAGGGTACTTCTCTAGCTGATTCTTTTGCTAAGCATCCGAAATATTTTG
ATGATTTTTACTGTAACCTCATCAGTGCCGGTGAAGCAGGTGGCGTACTGGAAGCATTATTAGATAAACTGGCTGTATAT
AAAGAAAAAACCCAAAGTATTAAGAAAAAAGTTAAAAGTGCCCTAACCTATCCGGTGGTTGTGGTCATCGTAGCAGTTGT
TCTGGTTATTGTCATGATGATGTTTGTATTGCCGTCTTTTGCCAAAGTATATCAGGGTATGGGTGTAGCGCTTCCCTGGC
TGACTCAGGTTATGATGAATATATCTGATTTCTTTGTGCGTTACGGTATATTTATTGTGATGGCAATCGTCCTCGGAGCA
ATTGGTTTTTATAAATGGTTTCAGAGCTCTGCTGATCTGAGAAAACGTTTTGATCATATGTTGTTAAAACTACCTATTTT
TGGACCAATTGTTCGTAAAGCAACCATTGCCCGCTGGGCTCGCACAACAGCAACCTTGTTTGCTGCAGGTGTACCACTAG
TAGAAGTACTGGATTCCGTTGCCGGAGCTGCAGGTAATATCGAATATGAAGAAGCTACTCAGGAAATCCGTGCCAAAGTT
AATCAGGGTATATCTCTTACTTCTGCCATGCAGGCAACCGAATTATTTCCTAACATGGTAATGCAAATGGCATCTATCGG
TGAAGAATCAGGTTCTTTGGATGACATGCTCAACAAGGCCGCAGAATTATATGAAGACGACGTAGATATAGCAGTTTCCC
AGCTATCTTCCCTGATGGAACCAATCATCATGGTTGTACTCGGTCTGATTATCGGTGTTATTTTGGTAGCAATGTACCTG
CCAATGTTCAATATGGGCAATGCAATAGGTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(75-198)

Type II secretion system (T2SS), protein F (T2SSF)

(279-401)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Neisseria gonorrhoeae MS11

65.903

95.854

0.632
  pilG Neisseria meningitidis 44/76-A

65.14

95.854

0.624
  pilC Legionella pneumophila strain ERS1305867

46.602

100

0.468
  pilC Acinetobacter baumannii D1279779

43.358

97.317

0.422
  pilC Acinetobacter baylyi ADP1

42.965

97.073

0.417
  pilC Pseudomonas stutzeri DSM 10701

42.857

97.317

0.417
  pilC Vibrio cholerae strain A1552

37.811

98.049

0.371
  pilC Vibrio campbellii strain DS40M4

36.725

98.293

0.361

Multiple sequence alignment