Detailed information NTG1017537

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ABX014_RS03945
• Genome accession: NZ_CP160070
• Coordinates: 851711..852562 (+)
• Length: 283 a.a.
• NCBI ID: WP_370578344.1
• Uniprot ID: -
• Organism: Snodgrassella alvi strain Amel05
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 846711..857562

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABX014_RS03930 (ABX014_13945)	recJ	846847..848544 (+)	1698	WP_367435912.1	single-stranded-DNA-specific exonuclease RecJ	-
ABX014_RS03935 (ABX014_13940)	pilF	848744..850423 (+)	1680	WP_370578343.1	type IV-A pilus assembly ATPase PilB	Machinery gene
ABX014_RS03940 (ABX014_13935)	pilG	850472..851704 (+)	1233	WP_037476130.1	type II secretion system F family protein	Machinery gene
ABX014_RS03945 (ABX014_13930)	pilD	851711..852562 (+)	852	WP_370578344.1	A24 family peptidase	Machinery gene
ABX014_RS03950 (ABX014_20610)	coaE	852559..853173 (+)	615	WP_370578345.1	dephospho-CoA kinase	-
ABX014_RS03955 (ABX014_20615)	zapD	853179..853931 (+)	753	WP_037476209.1	cell division protein ZapD	-
ABX014_RS03960 (ABX014_13900)	yacG	853931..854128 (+)	198	WP_025329859.1	DNA gyrase inhibitor YacG	-
ABX014_RS03965 (ABX014_13895)	-	854175..855095 (+)	921	WP_037476124.1	ABC transporter ATP-binding protein	-
ABX014_RS03970 (ABX014_13890)	-	855092..855853 (+)	762	WP_037476122.1	ABC transporter permease	-
ABX014_RS03975 (ABX014_13885)	-	855908..856156 (+)	249	WP_025329856.1	BolA family protein	-
ABX014_RS03980 (ABX014_13875)	murA	856196..857455 (+)	1260	WP_037476120.1	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	-

Sequence

Protein

• Length: 283 a.a.
• Molecular weight: 31257.16 Da
• Isoelectric Point: 8.0876

>NTDB_id=1017537 ABX014_RS03945 WP_370578344.1 851711..852562(+) (pilD) [Snodgrassella alvi strain Amel05]
MLTDTLFFSIVALISGCAVGSFLNVVIYRLPIMMERSWQAEARMALQLPAEQSNRFNLCVPHSACPHCQHKIRWWQNIPL
VSYILLRGRCASCSASISPRYFCVELLTGIAFAAVVWRYDVTSVAAGGLILTAALITLTFIDAETQLLPDQITLPLLWLG
LLFNWYCEFVPLADAVWGAALGYLSLWSLFWLFKLLTGKDGMGYGDFKLLAALGAWMGTAALPLIVFIAAIVGIIASLIL
RVARSQPMAFGPALAIAGWIVWMANSQINQLIHWWLRLSGFGA

Nucleotide

• Length: 852 bp

>NTDB_id=1017537 ABX014_RS03945 WP_370578344.1 851711..852562(+) (pilD) [Snodgrassella alvi strain Amel05]
ATGTTAACTGATACCTTGTTTTTCAGCATAGTTGCACTAATATCAGGTTGTGCTGTTGGTAGTTTTCTGAATGTAGTGAT
TTATCGTTTACCTATTATGATGGAACGAAGCTGGCAGGCTGAAGCGCGAATGGCTTTACAACTGCCTGCAGAGCAATCTA
ACCGTTTTAATTTGTGTGTTCCGCATTCAGCCTGCCCGCACTGTCAGCATAAAATCCGCTGGTGGCAGAATATACCTCTA
GTCAGTTATATACTGCTACGCGGACGCTGCGCTTCATGTTCAGCATCCATCAGCCCGCGCTATTTTTGTGTGGAACTTTT
AACCGGTATTGCTTTTGCTGCAGTAGTCTGGCGTTATGATGTCACATCTGTTGCTGCGGGCGGTCTGATACTGACTGCCG
CACTGATCACACTGACCTTTATAGATGCTGAAACCCAGCTGCTGCCTGACCAGATTACCTTACCCTTACTCTGGCTGGGT
TTACTGTTTAACTGGTATTGTGAGTTTGTCCCGTTAGCTGATGCTGTCTGGGGAGCTGCATTGGGCTATCTTAGCCTGTG
GTCACTTTTCTGGCTGTTCAAACTGTTAACCGGGAAAGATGGCATGGGTTATGGTGATTTTAAGCTATTGGCTGCTCTTG
GTGCATGGATGGGTACCGCCGCATTGCCCTTAATTGTATTTATTGCGGCAATTGTCGGCATTATTGCTTCACTTATTCTC
AGAGTTGCCCGTAGCCAGCCTATGGCTTTTGGTCCGGCACTGGCCATTGCCGGCTGGATTGTATGGATGGCAAATAGTCA
GATTAATCAGCTGATTCACTGGTGGCTGCGTCTTTCCGGATTTGGTGCATGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (130-236)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (15-119)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Neisseria gonorrhoeae MS11	56.343	94.7	0.534
pilD	Acinetobacter baumannii D1279779	50.554	95.76	0.484
pilD	Vibrio cholerae strain A1552	49.104	98.587	0.484
pilD	Acinetobacter nosocomialis M2	50.185	95.76	0.481
pilD	Vibrio campbellii strain DS40M4	46.494	95.76	0.445