Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ABSY19_RS08540 Genome accession   NZ_CP159956
Coordinates   1812412..1813629 (+) Length   405 a.a.
NCBI ID   WP_291121454.1    Uniprot ID   -
Organism   Hydrogenophaga sp. ANAO-22     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1807412..1818629
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABSY19_RS08525 (ABSY19_08520) - 1809132..1809371 (-) 240 WP_382161341.1 helix-turn-helix domain-containing protein -
  ABSY19_RS08530 (ABSY19_08525) - 1809646..1809969 (-) 324 WP_382161344.1 helix-turn-helix transcriptional regulator -
  ABSY19_RS08535 (ABSY19_08530) pilB 1810637..1812370 (+) 1734 WP_382161347.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ABSY19_RS08540 (ABSY19_08535) pilC 1812412..1813629 (+) 1218 WP_291121454.1 type II secretion system F family protein Machinery gene
  ABSY19_RS08545 (ABSY19_08540) - 1813629..1814492 (+) 864 WP_382161350.1 prepilin peptidase -
  ABSY19_RS08550 (ABSY19_08545) coaE 1814516..1815103 (+) 588 WP_382161353.1 dephospho-CoA kinase -
  ABSY19_RS08555 (ABSY19_08550) zapD 1815147..1815902 (+) 756 WP_291121446.1 cell division protein ZapD -
  ABSY19_RS08560 (ABSY19_08555) - 1815911..1816114 (+) 204 WP_382161355.1 DNA gyrase inhibitor YacG -
  ABSY19_RS08565 (ABSY19_08560) - 1816145..1816597 (-) 453 WP_382161358.1 NUDIX domain-containing protein -
  ABSY19_RS08570 (ABSY19_08565) - 1816594..1817472 (-) 879 WP_382161360.1 ATP-binding protein -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44351.02 Da        Isoelectric Point: 9.1426

>NTDB_id=1016888 ABSY19_RS08540 WP_291121454.1 1812412..1813629(+) (pilC) [Hydrogenophaga sp. ANAO-22]
MATAVSKNVKDAVFEWEGKDRNGKTVRGETRAAGENQVLAALRRQGIVPGKVKKRRMSSGKRIKPKDIAIFTRQLATMMK
AGVPLLQAFDIVGRGNANPSVTKLLNDIRTDVETGTSLSSAFRKHPLYFDSLYCNLVEAGEAAGILEELLDRLATYMEKT
EALKSKIKSALMYPIAVIIVAFVVVTIIMIFVIPSFKEVFSSFGADLPAPTLFVIAISEFFTEYWWLIFGVLGGGFYFFM
QAWRRNEKVQRFMDRLLLKLPIFGPLIEKSVIARWTRTLATMFAAGVPLVEALDSVGGASGNSVYAIATERIQQEVSTGT
SLTNAMTNANIFPSMVLQMCAIGEESGSIDHMLGKAADFYEAEVDDMVAGISSLMEPIIIVVLGTVIGGIVVSMYLPIFK
LGQVV

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=1016888 ABSY19_RS08540 WP_291121454.1 1812412..1813629(+) (pilC) [Hydrogenophaga sp. ANAO-22]
ATGGCAACCGCAGTATCCAAGAACGTCAAGGACGCCGTCTTCGAGTGGGAGGGCAAAGACCGCAACGGCAAGACCGTGCG
TGGAGAAACACGGGCCGCGGGAGAAAACCAGGTGTTGGCTGCGCTGCGGCGCCAGGGCATCGTGCCCGGCAAGGTCAAGA
AGCGCCGCATGAGTTCGGGCAAGCGCATCAAGCCCAAGGACATTGCCATCTTCACGCGCCAGCTGGCCACCATGATGAAA
GCCGGTGTGCCCCTGCTCCAGGCGTTCGACATCGTCGGCCGGGGCAACGCCAACCCCAGCGTCACCAAGCTGCTCAACGA
TATCCGCACCGATGTGGAAACCGGCACCTCGCTGAGTTCGGCGTTTCGCAAACACCCGCTGTACTTTGACAGCCTGTACT
GCAACCTCGTGGAAGCCGGTGAAGCCGCCGGTATTCTGGAGGAGTTGCTGGACCGCCTGGCCACTTACATGGAGAAGACC
GAGGCGCTCAAGTCCAAGATCAAGTCGGCGCTGATGTACCCGATCGCCGTGATCATCGTGGCCTTCGTGGTGGTGACCAT
CATCATGATCTTCGTGATCCCCTCGTTCAAGGAGGTGTTCTCCTCCTTCGGCGCCGATCTGCCCGCGCCGACCCTGTTCG
TGATCGCGATAAGCGAGTTCTTCACCGAGTACTGGTGGTTGATCTTTGGCGTCCTCGGTGGCGGCTTCTACTTTTTCATG
CAGGCTTGGCGGCGCAATGAGAAGGTGCAGCGGTTCATGGACCGCCTGCTGCTCAAGCTGCCGATCTTTGGCCCATTGAT
CGAAAAATCGGTCATCGCCCGCTGGACGCGCACGCTGGCGACGATGTTCGCGGCGGGCGTGCCCCTGGTGGAAGCGCTGG
ACTCGGTGGGCGGTGCATCGGGCAACTCGGTCTACGCCATCGCCACCGAACGGATCCAGCAGGAGGTGTCGACCGGCACC
AGCCTGACCAACGCCATGACCAATGCCAACATCTTCCCATCCATGGTGCTGCAGATGTGCGCCATCGGTGAGGAGTCGGG
CTCCATCGACCACATGCTGGGCAAGGCCGCCGACTTCTATGAAGCCGAGGTCGACGACATGGTGGCGGGCATCTCCAGCC
TGATGGAGCCCATCATCATCGTCGTGCTGGGGACCGTCATTGGCGGTATCGTGGTGTCGATGTACCTTCCCATCTTCAAG
CTGGGCCAGGTGGTTTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)

Type II secretion system (T2SS), protein F (T2SSF)

(275-397)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

54.726

99.259

0.543
  pilG Neisseria gonorrhoeae MS11

52.393

98.025

0.514
  pilG Neisseria meningitidis 44/76-A

52.141

98.025

0.511
  pilC Legionella pneumophila strain ERS1305867

51.263

97.778

0.501
  pilC Acinetobacter baylyi ADP1

49.749

98.272

0.489
  pilC Acinetobacter baumannii D1279779

48.403

100

0.486
  pilC Vibrio cholerae strain A1552

42.714

98.272

0.42
  pilC Vibrio campbellii strain DS40M4

40.25

98.765

0.398
  pilC Thermus thermophilus HB27

38.095

98.519

0.375

Multiple sequence alignment