Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ABU614_RS11685 Genome accession   NZ_CP159925
Coordinates   2696915..2698186 (-) Length   423 a.a.
NCBI ID   WP_363796231.1    Uniprot ID   A0AAU8MLY4
Organism   Lysobacter firmicutimachus strain SR10     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2691915..2703186
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABU614_RS11670 (ABU614_11670) - 2693904..2694857 (+) 954 WP_363800847.1 Nudix family hydrolase -
  ABU614_RS11675 (ABU614_11675) coaE 2695387..2696001 (-) 615 WP_363796230.1 dephospho-CoA kinase -
  ABU614_RS11680 (ABU614_11680) - 2696006..2696893 (-) 888 WP_064746435.1 A24 family peptidase -
  ABU614_RS11685 (ABU614_11685) pilC 2696915..2698186 (-) 1272 WP_363796231.1 type II secretion system F family protein Machinery gene
  ABU614_RS11690 (ABU614_11690) pilB 2698190..2699914 (-) 1725 WP_363796232.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ABU614_RS11695 (ABU614_11695) - 2700049..2700900 (+) 852 WP_363796233.1 glycosyltransferase family 2 protein -
  ABU614_RS11700 (ABU614_11700) - 2700915..2702021 (+) 1107 WP_064746438.1 UDP-N-acetylglucosamine 2-epimerase -
  ABU614_RS11705 (ABU614_11705) - 2702012..2702857 (+) 846 WP_363796234.1 hypothetical protein -

Sequence

Protein


Download         Length: 423 a.a.        Molecular weight: 45962.43 Da        Isoelectric Point: 10.2922

>NTDB_id=1016819 ABU614_RS11685 WP_363796231.1 2696915..2698186(-) (pilC) [Lysobacter firmicutimachus strain SR10]
MSATRSATRAATKQPQPQMRRANPLDVFVWEGTDKRGIKMKGEQAAKNANLLRAELRRQGITPTVVKPKGKPLFGAAGKR
ITPGDIAIFSRQIATMMKSGVPIVGALEIIGEGHKNPRMKKLLNAVRGDLESGLSLYEAMSKHPVQFDELYRNLVKAGES
AGVLETVLDTVATYKENIETLKGKIKKALFYPATVVAVAILVSAILLIFVVPQFQATFKSFGADLPAFTLMVIGMSDFMI
AWWWAVLAAVIAAAVAFVMAKNRSPAFAHFLDRMMLKIPVVGQILHNAAIARFSRTLAVTFRAGVPLVEALDTVAGATGN
VVYEKAVYRIRDDVSVGYQVNMAMKQVNLFPHMVIQMTAIGEEAGALDTMLVKVAEFYEQEVNNAVDALSSLLEPLIMII
LGVIVGGMVVAMYLPIFKLAATI

Nucleotide


Download         Length: 1272 bp        

>NTDB_id=1016819 ABU614_RS11685 WP_363796231.1 2696915..2698186(-) (pilC) [Lysobacter firmicutimachus strain SR10]
ATGTCCGCGACCCGATCCGCCACTCGCGCCGCCACCAAACAACCGCAGCCCCAGATGCGCCGCGCCAACCCGCTGGACGT
GTTCGTCTGGGAAGGCACCGACAAGCGCGGCATCAAGATGAAGGGCGAGCAGGCGGCCAAGAACGCCAACCTGCTGCGCG
CCGAGCTGCGCCGCCAGGGCATCACCCCGACCGTGGTCAAGCCCAAGGGCAAGCCGCTGTTCGGCGCCGCCGGCAAGCGC
ATCACCCCGGGCGACATCGCCATCTTCAGCCGCCAGATCGCCACCATGATGAAATCCGGCGTGCCGATCGTCGGCGCGCT
GGAGATCATCGGCGAGGGCCACAAGAACCCGCGCATGAAGAAATTGCTCAACGCGGTGCGCGGCGATCTGGAAAGCGGCC
TGTCGCTGTACGAGGCCATGTCCAAGCACCCGGTCCAGTTCGACGAGCTGTACCGCAACCTGGTCAAGGCCGGCGAATCG
GCCGGCGTGCTGGAGACCGTCCTCGACACGGTCGCGACCTACAAGGAAAACATCGAAACCCTCAAGGGCAAGATCAAGAA
GGCCCTGTTCTACCCCGCCACCGTGGTCGCGGTCGCGATCCTGGTCAGCGCGATCCTGCTGATCTTCGTGGTGCCGCAGT
TCCAGGCCACCTTCAAGAGCTTCGGCGCCGATCTGCCGGCCTTCACCCTGATGGTGATCGGCATGAGCGATTTCATGATC
GCCTGGTGGTGGGCGGTGCTGGCGGCCGTTATCGCCGCTGCGGTCGCCTTCGTCATGGCCAAGAACCGCTCGCCGGCCTT
CGCCCATTTCCTCGACCGGATGATGCTCAAGATTCCGGTGGTCGGGCAGATCCTGCACAACGCGGCGATCGCCCGCTTCT
CTCGCACCCTGGCGGTGACCTTCCGCGCCGGCGTGCCCTTGGTCGAGGCCCTGGACACGGTCGCCGGCGCCACCGGCAAC
GTGGTCTACGAGAAGGCCGTCTACCGCATCCGCGACGACGTCTCGGTCGGCTACCAGGTCAACATGGCGATGAAGCAGGT
CAACCTGTTCCCGCACATGGTGATCCAGATGACCGCGATCGGCGAAGAGGCCGGCGCGCTCGACACCATGCTGGTCAAGG
TCGCCGAGTTCTACGAGCAGGAGGTCAACAACGCCGTCGACGCCCTGTCCAGCCTGCTCGAACCGCTGATCATGATCATT
CTGGGCGTGATCGTCGGCGGCATGGTCGTGGCCATGTACCTGCCGATCTTCAAGCTTGCTGCGACGATCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(89-212)

Type II secretion system (T2SS), protein F (T2SSF)

(293-415)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Legionella pneumophila strain ERS1305867

56.436

95.508

0.539
  pilC Pseudomonas stutzeri DSM 10701

56.675

93.853

0.532
  pilC Acinetobacter baumannii D1279779

52.84

95.745

0.506
  pilC Acinetobacter baylyi ADP1

52.099

95.745

0.499
  pilG Neisseria gonorrhoeae MS11

44.25

94.563

0.418
  pilG Neisseria meningitidis 44/76-A

44.25

94.563

0.418
  pilC Vibrio campbellii strain DS40M4

41.542

95.035

0.395
  pilC Vibrio cholerae strain A1552

41.5

94.563

0.392
  pilC Thermus thermophilus HB27

39.753

95.745

0.381

Multiple sequence alignment