Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ABWH88_RS19060 Genome accession   NZ_CP159479
Coordinates   4006899..4008119 (-) Length   406 a.a.
NCBI ID   WP_014577713.1    Uniprot ID   E4PH71
Organism   Marinobacter adhaerens strain ac5     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4001899..4013119
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABWH88_RS19040 (ABWH88_19020) tsaA 4003591..4004334 (-) 744 WP_014577717.1 tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO -
  ABWH88_RS19045 - 4004334..4005427 (-) 1094 Protein_3754 hypothetical protein -
  ABWH88_RS19050 (ABWH88_19035) coaE 4005420..4006019 (-) 600 WP_014577715.1 dephospho-CoA kinase -
  ABWH88_RS19055 (ABWH88_19040) pilD 4006023..4006898 (-) 876 WP_014577714.1 A24 family peptidase Machinery gene
  ABWH88_RS19060 (ABWH88_19045) pilC 4006899..4008119 (-) 1221 WP_014577713.1 type II secretion system F family protein Machinery gene
  ABWH88_RS19065 (ABWH88_19050) pilB 4008122..4009837 (-) 1716 WP_014577712.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ABWH88_RS19070 (ABWH88_19055) - 4010151..4010561 (+) 411 WP_014577711.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  ABWH88_RS19075 (ABWH88_19060) - 4010812..4012086 (+) 1275 WP_041645356.1 O-antigen ligase -
  ABWH88_RS19080 (ABWH88_19065) - 4012172..4012570 (+) 399 WP_041645354.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -

Sequence

Protein


Download         Length: 406 a.a.        Molecular weight: 44103.92 Da        Isoelectric Point: 9.7995

>NTDB_id=1013760 ABWH88_RS19060 WP_014577713.1 4006899..4008119(-) (pilC) [Marinobacter adhaerens strain ac5]
MAEKAQKLQAFVWEGKDRKGNKATGEVSGTNLALVKAQLRKQGIVPSKVKKKSKPLFGGSKKITPFDIAMLTRQLATMMK
AGVPLVQSFDIVADGLENKGLQELILAIRNDIASGTSFAGALRKHPRHFNDLYCSLVDSGEKAGALEQMLDRIATYLEKS
ELLKKKVKKAMTYPAAVVVVAIIVTAILLVKVVPQFEALFTGFGADLPVFTQMVVNLSEWMQKWWFIGLLGIVGFVFLFK
EAKYRSKKFSDAIDKYTLKIPVIGEVLDKSAVARFGRVLSTTFAAGVPLVDALESVANATGNAVYRDGINKIKDEVASGT
QLQAAMRNADIFPVMAVQLTAIGEESGNLDEMLSKVADHYEAVVDDLVDNLSSLMEPLIMSVLGVLVGGLIIAMYLPIFQ
MGKVVG

Nucleotide


Download         Length: 1221 bp        

>NTDB_id=1013760 ABWH88_RS19060 WP_014577713.1 4006899..4008119(-) (pilC) [Marinobacter adhaerens strain ac5]
ATGGCAGAGAAAGCACAAAAGCTCCAGGCGTTCGTTTGGGAAGGCAAAGACCGAAAAGGTAATAAGGCGACCGGTGAGGT
TTCCGGAACCAACCTTGCACTTGTGAAAGCGCAGCTTCGTAAGCAAGGGATCGTGCCAAGCAAGGTGAAGAAAAAGTCGA
AACCACTCTTTGGCGGCAGCAAGAAGATCACACCCTTTGACATAGCGATGCTTACCCGCCAGCTAGCCACCATGATGAAG
GCAGGCGTTCCTCTGGTTCAGAGCTTTGACATTGTCGCGGACGGGCTGGAAAACAAAGGGCTTCAGGAACTCATTCTTGC
GATCAGGAATGATATTGCCTCAGGTACCAGCTTCGCCGGTGCCCTGCGAAAGCACCCGAGGCATTTCAACGACCTGTACT
GCAGCCTCGTCGATTCTGGCGAAAAAGCCGGTGCACTTGAACAGATGCTGGACCGGATTGCCACCTACCTCGAGAAGAGT
GAGCTGCTAAAGAAGAAGGTCAAGAAAGCGATGACCTATCCAGCGGCCGTTGTCGTTGTCGCCATTATCGTAACAGCGAT
TTTGCTTGTTAAAGTTGTTCCTCAGTTTGAAGCATTGTTTACCGGCTTTGGGGCCGACCTGCCTGTGTTCACTCAGATGG
TGGTAAACCTTTCGGAGTGGATGCAGAAATGGTGGTTTATTGGCTTGTTAGGCATTGTTGGCTTTGTTTTTCTCTTTAAG
GAGGCAAAGTACAGGTCTAAGAAGTTCTCAGATGCCATCGATAAGTACACCCTCAAAATTCCGGTTATAGGCGAGGTTCT
TGACAAATCAGCGGTTGCCAGGTTTGGGCGGGTCTTGTCGACTACATTTGCTGCCGGTGTACCGTTGGTAGACGCACTTG
AATCTGTAGCAAATGCAACCGGTAACGCGGTATACAGAGACGGAATCAACAAGATCAAGGACGAGGTCGCGAGCGGCACG
CAATTGCAAGCAGCAATGCGCAATGCTGACATCTTCCCGGTTATGGCTGTTCAGTTGACTGCTATCGGTGAAGAGTCCGG
TAACCTGGATGAAATGCTCTCCAAAGTCGCCGATCATTACGAGGCCGTAGTTGACGATCTGGTTGATAACCTGTCGTCCC
TCATGGAACCCTTGATCATGTCGGTTCTGGGCGTGCTGGTGGGTGGCTTGATCATCGCCATGTACCTTCCGATCTTCCAG
ATGGGTAAGGTGGTTGGCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(72-194)

Type II secretion system (T2SS), protein F (T2SSF)

(277-397)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB E4PH71

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

63.951

99.754

0.638
  pilC Acinetobacter baumannii D1279779

60

99.754

0.599
  pilC Acinetobacter baylyi ADP1

58.374

100

0.584
  pilC Legionella pneumophila strain ERS1305867

55.911

100

0.559
  pilC Vibrio campbellii strain DS40M4

42.157

100

0.424
  pilG Neisseria gonorrhoeae MS11

40.988

99.754

0.409
  pilC Vibrio cholerae strain A1552

40.887

100

0.409
  pilG Neisseria meningitidis 44/76-A

40.741

99.754

0.406

Multiple sequence alignment