Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   ABWH88_RS19055 Genome accession   NZ_CP159479
Coordinates   4006023..4006898 (-) Length   291 a.a.
NCBI ID   WP_014577714.1    Uniprot ID   E4PH72
Organism   Marinobacter adhaerens strain ac5     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4001023..4011898
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABWH88_RS19035 (ABWH88_19015) - 4001196..4003547 (-) 2352 WP_014577718.1 response regulator -
  ABWH88_RS19040 (ABWH88_19020) tsaA 4003591..4004334 (-) 744 WP_014577717.1 tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO -
  ABWH88_RS19045 - 4004334..4005427 (-) 1094 Protein_3754 hypothetical protein -
  ABWH88_RS19050 (ABWH88_19035) coaE 4005420..4006019 (-) 600 WP_014577715.1 dephospho-CoA kinase -
  ABWH88_RS19055 (ABWH88_19040) pilD 4006023..4006898 (-) 876 WP_014577714.1 A24 family peptidase Machinery gene
  ABWH88_RS19060 (ABWH88_19045) pilC 4006899..4008119 (-) 1221 WP_014577713.1 type II secretion system F family protein Machinery gene
  ABWH88_RS19065 (ABWH88_19050) pilB 4008122..4009837 (-) 1716 WP_014577712.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ABWH88_RS19070 (ABWH88_19055) - 4010151..4010561 (+) 411 WP_014577711.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -

Sequence

Protein


Download         Length: 291 a.a.        Molecular weight: 32193.36 Da        Isoelectric Point: 6.0900

>NTDB_id=1013759 ABWH88_RS19055 WP_014577714.1 4006023..4006898(-) (pilD) [Marinobacter adhaerens strain ac5]
MLDLETLLGTPWLLYLSVILVSLCVGSFLNVVILRLPKMMHQDWRCQCEEFLELPEKQRKEEERITLAKPASTCPSCGHG
IRAWENIPVLSWLVLRGKCASCKAPISPRYPIIEAVTAIFSVVTIAVIGPNESALWALLLVWALVALTVIDFDTQLLPDS
ITLPLMWLGLVLNYFGVLTDFNSAFWGAVVGYLALWSVYWLFKLVTGKEGMGHGDFKLLAALGAWLGWQLLPAVILLSSV
VGAVVGIGLMVFKQHGREVPIPFGPYLATAGLLCLWFGTEIQAFWYGFLGV

Nucleotide


Download         Length: 876 bp        

>NTDB_id=1013759 ABWH88_RS19055 WP_014577714.1 4006023..4006898(-) (pilD) [Marinobacter adhaerens strain ac5]
GTGCTTGATCTAGAAACATTGCTTGGCACCCCCTGGCTACTTTACCTTTCGGTTATTCTTGTATCTCTCTGCGTAGGTAG
CTTCCTGAATGTTGTCATTCTGAGGCTGCCGAAAATGATGCATCAGGACTGGCGCTGCCAGTGCGAGGAATTCCTGGAGC
TGCCTGAGAAGCAGCGTAAGGAGGAAGAGCGGATTACCCTCGCCAAGCCGGCGTCCACGTGCCCCTCCTGCGGCCATGGC
ATTCGGGCGTGGGAAAATATTCCAGTCCTCAGCTGGCTGGTTCTTCGGGGCAAATGCGCTTCTTGTAAAGCTCCCATTTC
GCCGCGCTATCCAATCATTGAGGCGGTTACCGCGATTTTTTCCGTGGTGACCATTGCTGTCATCGGGCCGAACGAGTCGG
CGCTTTGGGCCCTTTTGTTGGTTTGGGCTCTGGTGGCTTTGACAGTTATTGATTTCGACACTCAACTACTGCCAGACAGT
ATTACCCTTCCACTGATGTGGCTTGGCCTGGTGCTGAACTACTTTGGCGTGCTGACCGATTTTAACAGCGCGTTCTGGGG
GGCGGTGGTCGGTTATCTGGCTCTGTGGTCCGTCTACTGGCTGTTCAAGCTGGTTACCGGCAAGGAAGGAATGGGGCACG
GGGACTTCAAGCTGCTTGCCGCACTCGGCGCCTGGCTGGGGTGGCAATTGTTGCCAGCGGTTATCCTGCTTTCCTCGGTG
GTTGGTGCCGTTGTCGGTATCGGCTTGATGGTGTTCAAGCAGCATGGGCGCGAAGTGCCGATTCCGTTTGGGCCGTATTT
GGCGACTGCCGGGCTGCTCTGTTTGTGGTTTGGAACTGAGATTCAAGCGTTCTGGTACGGATTCCTGGGAGTCTGA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(138-247)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(21-125)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB E4PH72

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Acinetobacter baumannii D1279779

55.839

94.158

0.526
  pilD Acinetobacter nosocomialis M2

54.745

94.158

0.515
  pilD Vibrio cholerae strain A1552

51.429

96.22

0.495
  pilD Vibrio campbellii strain DS40M4

50.526

97.938

0.495
  pilD Neisseria gonorrhoeae MS11

48.708

93.127

0.454

Multiple sequence alignment