Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   ABQ274_RS06865 Genome accession   NZ_CP159281
Coordinates   1422285..1422674 (-) Length   129 a.a.
NCBI ID   WP_023163755.1    Uniprot ID   A0AAQ0U0J8
Organism   Lactococcus lactis strain FNZ339     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1403653..1422674 1422285..1422674 within 0


Gene organization within MGE regions


Location: 1403653..1422674
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABQ274_RS06720 (ABQ274_06720) - 1403653..1404852 (-) 1200 WP_095345217.1 site-specific integrase -
  ABQ274_RS06725 (ABQ274_06725) - 1404919..1405449 (-) 531 WP_023163772.1 helix-turn-helix transcriptional regulator -
  ABQ274_RS06730 (ABQ274_06730) - 1405596..1405790 (+) 195 WP_023163771.1 transcriptional regulator -
  ABQ274_RS06735 (ABQ274_06735) - 1405828..1406091 (+) 264 WP_023163770.1 hypothetical protein -
  ABQ274_RS06740 (ABQ274_06740) - 1406218..1406412 (+) 195 WP_023163769.1 DUF1655 domain-containing protein -
  ABQ274_RS06745 (ABQ274_06745) - 1406417..1406935 (+) 519 WP_023163768.1 hypothetical protein -
  ABQ274_RS06750 (ABQ274_06750) - 1406932..1407201 (+) 270 WP_023163767.1 hypothetical protein -
  ABQ274_RS06755 (ABQ274_06755) - 1407240..1407482 (+) 243 WP_353726813.1 hypothetical protein -
  ABQ274_RS06760 (ABQ274_06760) - 1407492..1407737 (+) 246 WP_023163765.1 hypothetical protein -
  ABQ274_RS06765 (ABQ274_06765) - 1407734..1407997 (+) 264 WP_054247181.1 hypothetical protein -
  ABQ274_RS06770 (ABQ274_06770) - 1407984..1408310 (+) 327 WP_023163763.1 HTH domain-containing protein -
  ABQ274_RS06775 (ABQ274_06775) - 1408321..1409034 (+) 714 WP_353726814.1 phage replisome organiser protein -
  ABQ274_RS06780 (ABQ274_06780) - 1409027..1409767 (+) 741 WP_023163761.1 hypothetical protein -
  ABQ274_RS06785 (ABQ274_06785) - 1409791..1409940 (+) 150 WP_023163760.1 hypothetical protein -
  ABQ274_RS06790 (ABQ274_06790) - 1410062..1410376 (+) 315 WP_023163759.1 hypothetical protein -
  ABQ274_RS06795 (ABQ274_06795) - 1410390..1410962 (+) 573 WP_023163758.1 hypothetical protein -
  ABQ274_RS06800 (ABQ274_06800) - 1411211..1411522 (+) 312 WP_043994739.1 hypothetical protein -
  ABQ274_RS06805 (ABQ274_06805) - 1411522..1411854 (+) 333 WP_023163756.1 hypothetical protein -
  ABQ274_RS06810 (ABQ274_06810) - 1412898..1413089 (+) 192 WP_003131566.1 hypothetical protein -
  ABQ274_RS06815 (ABQ274_06815) rsmI 1413166..1414041 (-) 876 WP_010905318.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  ABQ274_RS06820 (ABQ274_06820) yabA 1414041..1414367 (-) 327 WP_003131570.1 DNA replication initiation control protein YabA -
  ABQ274_RS06825 (ABQ274_06825) - 1414360..1415142 (-) 783 WP_010905316.1 stage 0 sporulation family protein -
  ABQ274_RS06830 (ABQ274_06830) - 1415194..1416054 (-) 861 WP_003131573.1 DNA polymerase III subunit delta' -
  ABQ274_RS06835 (ABQ274_06835) tmk 1416187..1416822 (-) 636 WP_012897230.1 dTMP kinase -
  ABQ274_RS06840 (ABQ274_06840) yycF 1417000..1417701 (+) 702 WP_003131580.1 response regulator YycF -
  ABQ274_RS06845 (ABQ274_06845) - 1417694..1419136 (+) 1443 WP_010905315.1 cell wall metabolism sensor histidine kinase WalK -
  ABQ274_RS06850 (ABQ274_06850) - 1419307..1420119 (+) 813 WP_003131583.1 MBL fold metallo-hydrolase -
  ABQ274_RS06855 (ABQ274_06855) groL 1420165..1421793 (-) 1629 WP_003131585.1 chaperonin GroEL -
  ABQ274_RS06860 (ABQ274_06860) groES 1421881..1422165 (-) 285 WP_003131589.1 co-chaperone GroES -
  ABQ274_RS06865 (ABQ274_06865) ssbB 1422285..1422674 (-) 390 WP_023163755.1 single-stranded DNA-binding protein Machinery gene

Sequence

Protein


Download         Length: 129 a.a.        Molecular weight: 14662.70 Da        Isoelectric Point: 8.3705

>NTDB_id=1013054 ABQ274_RS06865 WP_023163755.1 1422285..1422674(-) (ssbB) [Lactococcus lactis strain FNZ339]
MNKTMLIGRLTSASEISKTTNDKSYVRVTLAVNRRFKNEKGEREADFISIIIWGKSAETLVSYAKKGSLISIEGEIRTRN
YTDKQNQKHYVTEILGLSYDLLESRATIALRESAIKTEETLLDAEELPF

Nucleotide


Download         Length: 390 bp        

>NTDB_id=1013054 ABQ274_RS06865 WP_023163755.1 1422285..1422674(-) (ssbB) [Lactococcus lactis strain FNZ339]
ATGAATAAAACCATGTTAATTGGACGCTTAACCAGTGCGTCAGAAATTTCAAAAACAACAAATGATAAATCATATGTCCG
TGTGACCTTGGCAGTCAATCGCCGTTTCAAAAATGAAAAAGGAGAACGAGAGGCAGATTTTATTTCAATTATTATTTGGG
GAAAATCTGCAGAAACTTTAGTTTCTTACGCAAAAAAAGGAAGTCTTATTTCAATTGAAGGAGAAATTAGAACTAGAAAT
TATACGGATAAGCAAAATCAAAAACATTATGTCACAGAAATCTTAGGACTGAGTTATGATTTACTTGAAAGTAGGGCAAC
AATCGCTTTACGAGAAAGCGCTATAAAGACTGAAGAAACCTTACTTGATGCGGAAGAACTCCCTTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(1-95)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Lactococcus lactis subsp. cremoris KW2

89.922

100

0.899
  ssbB Streptococcus sobrinus strain NIDR 6715-7

60

100

0.605
  ssbB/cilA Streptococcus pneumoniae TIGR4

56.154

100

0.566
  ssbB/cilA Streptococcus mitis NCTC 12261

55.385

100

0.558
  ssbB/cilA Streptococcus pneumoniae R6

55.385

100

0.558
  ssbB/cilA Streptococcus pneumoniae Rx1

55.385

100

0.558
  ssbB/cilA Streptococcus pneumoniae D39

55.385

100

0.558
  ssbB/cilA Streptococcus mitis SK321

55.385

100

0.558
  ssbA Streptococcus mutans UA159

54.615

100

0.55
  ssb Latilactobacillus sakei subsp. sakei 23K

43.75

86.822

0.38

Multiple sequence alignment