Detailed information
Bioinformatically predicted
Overview
| Name | ssbB | Type | Machinery gene |
| Locus tag | ABQ274_RS06865 | Genome accession | NZ_CP159281 |
| Coordinates | 1422285..1422674 (-) | Length | 129 a.a. |
| NCBI ID | WP_023163755.1 | Uniprot ID | A0AAQ0U0J8 |
| Organism | Lactococcus lactis strain FNZ339 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 1417285..1427674
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ABQ274_RS06845 (ABQ274_06845) | - | 1417694..1419136 (+) | 1443 | WP_010905315.1 | cell wall metabolism sensor histidine kinase WalK | - |
| ABQ274_RS06850 (ABQ274_06850) | - | 1419307..1420119 (+) | 813 | WP_003131583.1 | MBL fold metallo-hydrolase | - |
| ABQ274_RS06855 (ABQ274_06855) | groL | 1420165..1421793 (-) | 1629 | WP_003131585.1 | chaperonin GroEL | - |
| ABQ274_RS06860 (ABQ274_06860) | groES | 1421881..1422165 (-) | 285 | WP_003131589.1 | co-chaperone GroES | - |
| ABQ274_RS06865 (ABQ274_06865) | ssbB | 1422285..1422674 (-) | 390 | WP_023163755.1 | single-stranded DNA-binding protein | Machinery gene |
| ABQ274_RS06870 (ABQ274_06870) | - | 1422764..1424104 (-) | 1341 | WP_023163754.1 | FAD-dependent oxidoreductase | - |
| ABQ274_RS06875 (ABQ274_06875) | ytpR | 1424267..1424893 (-) | 627 | WP_031559372.1 | YtpR family tRNA-binding protein | - |
| ABQ274_RS06880 (ABQ274_06880) | - | 1424979..1425296 (-) | 318 | WP_353726815.1 | thioredoxin family protein | - |
| ABQ274_RS06885 (ABQ274_06885) | - | 1425338..1425622 (-) | 285 | WP_003131596.1 | hypothetical protein | - |
| ABQ274_RS06890 (ABQ274_06890) | pepA | 1425725..1426792 (+) | 1068 | WP_014570380.1 | glutamyl aminopeptidase | - |
Sequence
Protein
Download Length: 129 a.a. Molecular weight: 14662.70 Da Isoelectric Point: 8.3705
>NTDB_id=1013054 ABQ274_RS06865 WP_023163755.1 1422285..1422674(-) (ssbB) [Lactococcus lactis strain FNZ339]
MNKTMLIGRLTSASEISKTTNDKSYVRVTLAVNRRFKNEKGEREADFISIIIWGKSAETLVSYAKKGSLISIEGEIRTRN
YTDKQNQKHYVTEILGLSYDLLESRATIALRESAIKTEETLLDAEELPF
MNKTMLIGRLTSASEISKTTNDKSYVRVTLAVNRRFKNEKGEREADFISIIIWGKSAETLVSYAKKGSLISIEGEIRTRN
YTDKQNQKHYVTEILGLSYDLLESRATIALRESAIKTEETLLDAEELPF
Nucleotide
Download Length: 390 bp
>NTDB_id=1013054 ABQ274_RS06865 WP_023163755.1 1422285..1422674(-) (ssbB) [Lactococcus lactis strain FNZ339]
ATGAATAAAACCATGTTAATTGGACGCTTAACCAGTGCGTCAGAAATTTCAAAAACAACAAATGATAAATCATATGTCCG
TGTGACCTTGGCAGTCAATCGCCGTTTCAAAAATGAAAAAGGAGAACGAGAGGCAGATTTTATTTCAATTATTATTTGGG
GAAAATCTGCAGAAACTTTAGTTTCTTACGCAAAAAAAGGAAGTCTTATTTCAATTGAAGGAGAAATTAGAACTAGAAAT
TATACGGATAAGCAAAATCAAAAACATTATGTCACAGAAATCTTAGGACTGAGTTATGATTTACTTGAAAGTAGGGCAAC
AATCGCTTTACGAGAAAGCGCTATAAAGACTGAAGAAACCTTACTTGATGCGGAAGAACTCCCTTTCTAA
ATGAATAAAACCATGTTAATTGGACGCTTAACCAGTGCGTCAGAAATTTCAAAAACAACAAATGATAAATCATATGTCCG
TGTGACCTTGGCAGTCAATCGCCGTTTCAAAAATGAAAAAGGAGAACGAGAGGCAGATTTTATTTCAATTATTATTTGGG
GAAAATCTGCAGAAACTTTAGTTTCTTACGCAAAAAAAGGAAGTCTTATTTCAATTGAAGGAGAAATTAGAACTAGAAAT
TATACGGATAAGCAAAATCAAAAACATTATGTCACAGAAATCTTAGGACTGAGTTATGATTTACTTGAAAGTAGGGCAAC
AATCGCTTTACGAGAAAGCGCTATAAAGACTGAAGAAACCTTACTTGATGCGGAAGAACTCCCTTTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbB | Lactococcus lactis subsp. cremoris KW2 |
89.922 |
100 |
0.899 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
60 |
100 |
0.605 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
56.154 |
100 |
0.566 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
55.385 |
100 |
0.558 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
55.385 |
100 |
0.558 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
55.385 |
100 |
0.558 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
55.385 |
100 |
0.558 |
| ssbB/cilA | Streptococcus mitis SK321 |
55.385 |
100 |
0.558 |
| ssbA | Streptococcus mutans UA159 |
54.615 |
100 |
0.55 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
43.75 |
86.822 |
0.38 |