Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ABVN22_RS08475 Genome accession   NZ_CP159260
Coordinates   1848109..1849317 (-) Length   402 a.a.
NCBI ID   WP_105697430.1    Uniprot ID   A0A2S9EP27
Organism   Pseudomonas poae strain MYb114     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1843109..1854317
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABVN22_RS08435 (ABVN22_08435) - 1843142..1844440 (-) 1299 WP_105697435.1 NAD(P)/FAD-dependent oxidoreductase -
  ABVN22_RS08440 (ABVN22_08440) - 1844501..1844674 (-) 174 WP_064450648.1 DUF3094 family protein -
  ABVN22_RS08445 (ABVN22_08445) - 1844729..1845358 (-) 630 WP_105697434.1 DUF1780 domain-containing protein -
  ABVN22_RS08450 (ABVN22_08450) - 1845461..1846150 (+) 690 WP_105697433.1 energy-coupling factor ABC transporter permease -
  ABVN22_RS08455 (ABVN22_08455) - 1846217..1846432 (+) 216 WP_025856597.1 hypothetical protein -
  ABVN22_RS08460 (ABVN22_08460) yacG 1846429..1846629 (-) 201 WP_004372356.1 DNA gyrase inhibitor YacG -
  ABVN22_RS08465 (ABVN22_08465) coaE 1846626..1847249 (-) 624 WP_105697432.1 dephospho-CoA kinase -
  ABVN22_RS08470 (ABVN22_08470) pilD 1847246..1848112 (-) 867 WP_105697431.1 A24 family peptidase Machinery gene
  ABVN22_RS08475 (ABVN22_08475) pilC 1848109..1849317 (-) 1209 WP_105697430.1 type II secretion system F family protein Machinery gene
  ABVN22_RS08480 (ABVN22_08480) - 1849520..1849936 (+) 417 WP_105697537.1 pilin -
  ABVN22_RS08485 (ABVN22_08485) - 1849972..1851372 (+) 1401 WP_105697429.1 O-antigen ligase family protein -
  ABVN22_RS08495 (ABVN22_08495) - 1851654..1851959 (+) 306 WP_105697428.1 DUF6388 family protein -
  ABVN22_RS08500 (ABVN22_08500) nadC 1852011..1852859 (-) 849 WP_105697427.1 carboxylating nicotinate-nucleotide diphosphorylase -

Sequence

Protein


Download         Length: 402 a.a.        Molecular weight: 43575.80 Da        Isoelectric Point: 10.1813

>NTDB_id=1012988 ABVN22_RS08475 WP_105697430.1 1848109..1849317(-) (pilC) [Pseudomonas poae strain MYb114]
MDNASTIYAWEGINRKGRRVSGQTRGHNPALIKAQLRQQGINPDRVRKQYPALPSLTRSIKTTDITLFTRQLATLSRAGV
PLLQAFDIISEGVDSRPLRELAQGLKQEIASGLGLADALRKHSRYFDELYCNLVAAGEQSGALETLLERVAIHREKSEQL
KARIKKAMTYPIAVLLVASIVTSILLIHVVPQFQSLFNGVGSTLPGFTLHVIALSAFMQKAWWMVALGLGIVAMGLRQAY
KTHPGFRHWLDAGLLKAPLAGKLLRHSCVARFARTLSTTFAAGVPLVQALDSAAGAAGNAPFKQAIEHMRHDVSTGMPLN
QSMASSGLFPGMAIQMAAIGEESGTLDRMLEKVANHFETDVDNQVDNLTSLMEPLIMVVLGGIVGALVIAMYLPVFQLGN
AL

Nucleotide


Download         Length: 1209 bp        

>NTDB_id=1012988 ABVN22_RS08475 WP_105697430.1 1848109..1849317(-) (pilC) [Pseudomonas poae strain MYb114]
ATGGACAACGCTTCAACGATCTACGCCTGGGAAGGCATCAACCGCAAAGGCCGCCGGGTATCCGGACAAACCAGGGGGCA
CAACCCCGCCTTGATCAAGGCACAACTGCGCCAGCAAGGCATCAACCCCGACCGGGTGCGCAAGCAGTATCCCGCGCTGC
CAAGCCTTACACGCTCGATCAAAACGACGGATATCACGCTGTTCACGCGGCAGTTGGCCACACTGTCGCGGGCCGGGGTG
CCGCTGTTGCAGGCCTTCGACATTATCAGCGAAGGTGTCGACAGCCGCCCGCTCCGTGAGCTGGCGCAAGGGCTGAAACA
GGAGATCGCCAGCGGTCTTGGCCTGGCGGACGCACTGCGCAAACACTCGCGGTACTTCGATGAGCTGTATTGCAACCTGG
TGGCCGCCGGCGAACAGTCCGGGGCGCTTGAAACGCTGCTGGAGCGTGTGGCGATTCACAGGGAAAAGAGCGAACAGCTC
AAAGCCAGGATCAAGAAGGCCATGACTTACCCGATTGCAGTCCTGTTGGTTGCGAGCATTGTCACCAGCATTCTGTTGAT
CCATGTCGTACCGCAATTTCAAAGTTTGTTTAACGGGGTCGGCAGCACGCTGCCGGGGTTTACCCTGCACGTCATCGCCT
TGTCGGCATTCATGCAAAAGGCCTGGTGGATGGTGGCGCTTGGCCTGGGCATAGTCGCCATGGGGCTGCGCCAGGCCTAC
AAGACTCACCCCGGCTTTCGCCATTGGCTGGATGCAGGTTTGTTGAAAGCGCCCCTCGCAGGCAAACTGCTGAGACATTC
TTGCGTGGCCCGCTTTGCCCGCACGCTGTCCACGACTTTCGCCGCCGGTGTGCCGCTGGTGCAGGCGCTGGACTCGGCGG
CAGGGGCCGCGGGCAACGCACCGTTCAAACAGGCAATCGAGCATATGCGTCACGATGTATCTACCGGCATGCCGTTGAAT
CAATCCATGGCCAGCAGTGGCCTGTTCCCGGGCATGGCGATCCAGATGGCGGCAATTGGTGAGGAGTCAGGCACCCTGGA
CCGCATGCTGGAAAAAGTCGCCAACCATTTCGAAACCGATGTGGATAACCAGGTCGACAACCTCACCAGTCTGATGGAGC
CGCTGATCATGGTGGTGTTGGGGGGAATCGTCGGCGCATTGGTGATCGCCATGTACCTGCCGGTATTTCAGTTGGGGAAC
GCGTTGTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(68-191)

Type II secretion system (T2SS), protein F (T2SSF)

(272-394)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2S9EP27

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

58.543

99.005

0.58
  pilC Acinetobacter baylyi ADP1

50.251

99.005

0.498
  pilC Acinetobacter baumannii D1279779

50.126

98.756

0.495
  pilC Legionella pneumophila strain ERS1305867

48.485

98.507

0.478
  pilC Vibrio cholerae strain A1552

40.657

98.507

0.401
  pilC Vibrio campbellii strain DS40M4

39.196

99.005

0.388
  pilG Neisseria gonorrhoeae MS11

40.209

95.274

0.383
  pilG Neisseria meningitidis 44/76-A

39.687

95.274

0.378
  pilC Thermus thermophilus HB27

36.842

99.254

0.366

Multiple sequence alignment