Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | ABVN22_RS08470 | Genome accession | NZ_CP159260 |
| Coordinates | 1847246..1848112 (-) | Length | 288 a.a. |
| NCBI ID | WP_105697431.1 | Uniprot ID | A0A2S9ENV3 |
| Organism | Pseudomonas poae strain MYb114 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1842246..1853112
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ABVN22_RS08435 (ABVN22_08435) | - | 1843142..1844440 (-) | 1299 | WP_105697435.1 | NAD(P)/FAD-dependent oxidoreductase | - |
| ABVN22_RS08440 (ABVN22_08440) | - | 1844501..1844674 (-) | 174 | WP_064450648.1 | DUF3094 family protein | - |
| ABVN22_RS08445 (ABVN22_08445) | - | 1844729..1845358 (-) | 630 | WP_105697434.1 | DUF1780 domain-containing protein | - |
| ABVN22_RS08450 (ABVN22_08450) | - | 1845461..1846150 (+) | 690 | WP_105697433.1 | energy-coupling factor ABC transporter permease | - |
| ABVN22_RS08455 (ABVN22_08455) | - | 1846217..1846432 (+) | 216 | WP_025856597.1 | hypothetical protein | - |
| ABVN22_RS08460 (ABVN22_08460) | yacG | 1846429..1846629 (-) | 201 | WP_004372356.1 | DNA gyrase inhibitor YacG | - |
| ABVN22_RS08465 (ABVN22_08465) | coaE | 1846626..1847249 (-) | 624 | WP_105697432.1 | dephospho-CoA kinase | - |
| ABVN22_RS08470 (ABVN22_08470) | pilD | 1847246..1848112 (-) | 867 | WP_105697431.1 | A24 family peptidase | Machinery gene |
| ABVN22_RS08475 (ABVN22_08475) | pilC | 1848109..1849317 (-) | 1209 | WP_105697430.1 | type II secretion system F family protein | Machinery gene |
| ABVN22_RS08480 (ABVN22_08480) | - | 1849520..1849936 (+) | 417 | WP_105697537.1 | pilin | - |
| ABVN22_RS08485 (ABVN22_08485) | - | 1849972..1851372 (+) | 1401 | WP_105697429.1 | O-antigen ligase family protein | - |
| ABVN22_RS08495 (ABVN22_08495) | - | 1851654..1851959 (+) | 306 | WP_105697428.1 | DUF6388 family protein | - |
| ABVN22_RS08500 (ABVN22_08500) | nadC | 1852011..1852859 (-) | 849 | WP_105697427.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
Sequence
Protein
Download Length: 288 a.a. Molecular weight: 31898.10 Da Isoelectric Point: 7.4319
>NTDB_id=1012987 ABVN22_RS08470 WP_105697431.1 1847246..1848112(-) (pilD) [Pseudomonas poae strain MYb114]
MSLLLSEHPPAFVWLALVLGLIIGSFLNVLVWRLPKMLEREWRAQAHEVLGLPAEPAEPTYNLMHPNSCCPHCNHPIRPW
ENIPLLSYLVLRGRCAQCQGPISARYPLTELACGLITAFVAWHFGFGWQAGTVILLSWGLLAMSLIDADHQLLPDVLVLP
LLWLGLIVNAFGLLTTLPDALWGAVIGYMSLWSVFWLFKLLTGKDGMGHGDFKLMALLGAWGGWQILPMTLLMASLVGVI
VGLVLMRVRKTHASTPMPFGPYLAIAGWIALLWGGQITDFYLQSVGFR
MSLLLSEHPPAFVWLALVLGLIIGSFLNVLVWRLPKMLEREWRAQAHEVLGLPAEPAEPTYNLMHPNSCCPHCNHPIRPW
ENIPLLSYLVLRGRCAQCQGPISARYPLTELACGLITAFVAWHFGFGWQAGTVILLSWGLLAMSLIDADHQLLPDVLVLP
LLWLGLIVNAFGLLTTLPDALWGAVIGYMSLWSVFWLFKLLTGKDGMGHGDFKLMALLGAWGGWQILPMTLLMASLVGVI
VGLVLMRVRKTHASTPMPFGPYLAIAGWIALLWGGQITDFYLQSVGFR
Nucleotide
Download Length: 867 bp
>NTDB_id=1012987 ABVN22_RS08470 WP_105697431.1 1847246..1848112(-) (pilD) [Pseudomonas poae strain MYb114]
GTGAGCCTGCTGTTGAGTGAACATCCGCCAGCATTTGTCTGGCTGGCGTTGGTGCTGGGGCTGATCATCGGCAGCTTTCT
CAATGTGCTGGTGTGGCGCTTGCCAAAGATGCTCGAACGCGAATGGCGCGCCCAGGCCCATGAAGTCCTCGGCTTACCGG
CAGAACCCGCCGAGCCGACCTACAACCTGATGCACCCCAACTCCTGCTGTCCGCACTGCAATCATCCGATCCGCCCTTGG
GAAAATATCCCGCTGCTCAGTTATCTGGTGCTTCGAGGCCGATGCGCCCAGTGCCAGGGGCCAATCAGCGCCCGCTATCC
GCTCACGGAACTGGCCTGTGGGCTGATCACTGCTTTCGTGGCCTGGCACTTCGGTTTCGGCTGGCAAGCGGGCACCGTAA
TACTGCTGAGTTGGGGCTTGCTGGCGATGAGCTTGATCGATGCCGACCACCAATTGCTACCCGATGTGCTGGTGCTGCCT
TTGCTGTGGCTGGGGCTGATCGTCAACGCATTCGGCTTACTGACCACACTGCCTGACGCCTTGTGGGGCGCGGTGATCGG
TTACATGAGCCTGTGGAGCGTATTCTGGTTGTTCAAATTGCTCACCGGCAAGGACGGCATGGGCCACGGTGACTTCAAGC
TGATGGCATTGCTGGGTGCATGGGGCGGCTGGCAGATTCTGCCGATGACGCTGCTGATGGCGTCGCTGGTGGGCGTGATT
GTCGGGTTGGTCCTGATGCGTGTGCGCAAGACCCACGCATCGACACCCATGCCGTTTGGTCCGTATCTGGCCATTGCCGG
CTGGATTGCATTGCTCTGGGGTGGTCAAATAACCGACTTCTATTTGCAGTCTGTCGGTTTCAGATGA
GTGAGCCTGCTGTTGAGTGAACATCCGCCAGCATTTGTCTGGCTGGCGTTGGTGCTGGGGCTGATCATCGGCAGCTTTCT
CAATGTGCTGGTGTGGCGCTTGCCAAAGATGCTCGAACGCGAATGGCGCGCCCAGGCCCATGAAGTCCTCGGCTTACCGG
CAGAACCCGCCGAGCCGACCTACAACCTGATGCACCCCAACTCCTGCTGTCCGCACTGCAATCATCCGATCCGCCCTTGG
GAAAATATCCCGCTGCTCAGTTATCTGGTGCTTCGAGGCCGATGCGCCCAGTGCCAGGGGCCAATCAGCGCCCGCTATCC
GCTCACGGAACTGGCCTGTGGGCTGATCACTGCTTTCGTGGCCTGGCACTTCGGTTTCGGCTGGCAAGCGGGCACCGTAA
TACTGCTGAGTTGGGGCTTGCTGGCGATGAGCTTGATCGATGCCGACCACCAATTGCTACCCGATGTGCTGGTGCTGCCT
TTGCTGTGGCTGGGGCTGATCGTCAACGCATTCGGCTTACTGACCACACTGCCTGACGCCTTGTGGGGCGCGGTGATCGG
TTACATGAGCCTGTGGAGCGTATTCTGGTTGTTCAAATTGCTCACCGGCAAGGACGGCATGGGCCACGGTGACTTCAAGC
TGATGGCATTGCTGGGTGCATGGGGCGGCTGGCAGATTCTGCCGATGACGCTGCTGATGGCGTCGCTGGTGGGCGTGATT
GTCGGGTTGGTCCTGATGCGTGTGCGCAAGACCCACGCATCGACACCCATGCCGTTTGGTCCGTATCTGGCCATTGCCGG
CTGGATTGCATTGCTCTGGGGTGGTCAAATAACCGACTTCTATTTGCAGTCTGTCGGTTTCAGATGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio cholerae strain A1552 |
53.405 |
96.875 |
0.517 |
| pilD | Vibrio campbellii strain DS40M4 |
50 |
97.222 |
0.486 |
| pilD | Neisseria gonorrhoeae MS11 |
50 |
92.361 |
0.462 |
| pilD | Acinetobacter nosocomialis M2 |
47.985 |
94.792 |
0.455 |
| pilD | Acinetobacter baumannii D1279779 |
47.985 |
94.792 |
0.455 |