Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | ABU995_RS01570 | Genome accession | NZ_CP159113 |
| Coordinates | 189605..190063 (+) | Length | 152 a.a. |
| NCBI ID | WP_002365911.1 | Uniprot ID | Q8VT46 |
| Organism | Enterococcus faecalis strain 10033598-2 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 175940..226051 | 189605..190063 | within | 0 |
Gene organization within MGE regions
Location: 175940..226051
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ABU995_RS01495 (ABU995_01495) | - | 176339..176694 (+) | 356 | Protein_156 | sigma-70 family RNA polymerase sigma factor | - |
| ABU995_RS01500 (ABU995_01500) | - | 177766..181683 (+) | 3918 | WP_353630042.1 | LPXTG-anchored aggregation substance | - |
| ABU995_RS01505 (ABU995_01505) | prgU | 181745..182101 (+) | 357 | WP_010714280.1 | pheromone response system RNA-binding regulator PrgU | - |
| ABU995_RS01510 (ABU995_01510) | - | 182123..182509 (+) | 387 | WP_002364326.1 | hypothetical protein | - |
| ABU995_RS01515 (ABU995_01515) | - | 182655..182915 (+) | 261 | WP_002370667.1 | hypothetical protein | - |
| ABU995_RS01520 (ABU995_01520) | - | 182926..183804 (+) | 879 | WP_002377931.1 | hypothetical protein | - |
| ABU995_RS01525 (ABU995_01525) | - | 183824..184684 (+) | 861 | WP_010710128.1 | LPXTG cell wall anchor domain-containing protein | - |
| ABU995_RS01530 (ABU995_01530) | - | 184710..185981 (+) | 1272 | WP_002415819.1 | CHAP domain-containing protein | - |
| ABU995_RS01535 (ABU995_01535) | - | 185984..186601 (+) | 618 | WP_002377936.1 | hypothetical protein | - |
| ABU995_RS01540 (ABU995_01540) | - | 186585..187001 (+) | 417 | WP_002401419.1 | thioredoxin domain-containing protein | - |
| ABU995_RS01545 (ABU995_01545) | - | 187001..187315 (+) | 315 | WP_002360796.1 | hypothetical protein | - |
| ABU995_RS01550 (ABU995_01550) | - | 187308..188342 (+) | 1035 | WP_002403100.1 | conjugal transfer protein | - |
| ABU995_RS01555 (ABU995_01555) | - | 188347..188607 (+) | 261 | WP_010706916.1 | hypothetical protein | - |
| ABU995_RS01560 (ABU995_01560) | - | 188607..188996 (+) | 390 | WP_002360791.1 | TcpE family conjugal transfer membrane protein | - |
| ABU995_RS01565 (ABU995_01565) | - | 189028..189510 (+) | 483 | WP_002377938.1 | hypothetical protein | - |
| ABU995_RS01570 (ABU995_01570) | ssb | 189605..190063 (+) | 459 | WP_002365911.1 | single-stranded DNA-binding protein | Machinery gene |
| ABU995_RS01575 (ABU995_01575) | - | 190168..192660 (+) | 2493 | WP_002377939.1 | ATP-binding protein | - |
| ABU995_RS01580 (ABU995_01580) | - | 192617..193015 (+) | 399 | WP_002370287.1 | DUF4923 family protein | - |
| ABU995_RS01585 (ABU995_01585) | - | 193028..195373 (+) | 2346 | WP_002377940.1 | CD3337/EF1877 family mobilome membrane protein | - |
| ABU995_RS01590 (ABU995_01590) | - | 195360..197618 (+) | 2259 | WP_010710132.1 | TraM recognition domain-containing protein | - |
| ABU995_RS01595 (ABU995_01595) | - | 198141..198926 (+) | 786 | WP_002360778.1 | replication-relaxation family protein | - |
| ABU995_RS01600 (ABU995_01600) | - | 198932..199420 (+) | 489 | WP_010710133.1 | hypothetical protein | - |
| ABU995_RS01605 (ABU995_01605) | - | 200012..200278 (+) | 267 | WP_002377947.1 | hypothetical protein | - |
| ABU995_RS01610 (ABU995_01610) | - | 200311..200811 (+) | 501 | WP_002360775.1 | DnaJ domain-containing protein | - |
| ABU995_RS01615 (ABU995_01615) | - | 200824..201072 (+) | 249 | WP_002360773.1 | DUF3850 domain-containing protein | - |
| ABU995_RS01620 (ABU995_01620) | - | 201148..201564 (+) | 417 | WP_010710134.1 | single-stranded DNA-binding protein | - |
| ABU995_RS01625 (ABU995_01625) | - | 201588..202172 (+) | 585 | WP_002377949.1 | thermonuclease family protein | - |
| ABU995_RS01630 (ABU995_01630) | - | 202283..202549 (+) | 267 | WP_002369771.1 | type II toxin-antitoxin system RelB/DinJ family antitoxin | - |
| ABU995_RS01635 (ABU995_01635) | - | 202542..202817 (+) | 276 | WP_002360769.1 | type II toxin-antitoxin system YafQ family toxin | - |
| ABU995_RS01640 (ABU995_01640) | - | 203008..203652 (-) | 645 | WP_002377952.1 | IS6 family transposase | - |
| ABU995_RS01645 (ABU995_01645) | bsh | 203876..204850 (+) | 975 | WP_002355428.1 | choloylglycine hydrolase | - |
| ABU995_RS01650 (ABU995_01650) | - | 205519..206127 (-) | 609 | Protein_187 | IS6 family transposase | - |
| ABU995_RS01655 (ABU995_01655) | - | 206159..206344 (-) | 186 | WP_002358660.1 | hypothetical protein | - |
| ABU995_RS01660 (ABU995_01660) | - | 206434..206703 (+) | 270 | Protein_189 | LPXTG cell wall anchor domain-containing protein | - |
| ABU995_RS01665 (ABU995_01665) | - | 206831..207769 (+) | 939 | WP_002370935.1 | 2-dehydropantoate 2-reductase | - |
| ABU995_RS01670 (ABU995_01670) | - | 207795..208832 (+) | 1038 | WP_002355369.1 | PTS sugar transporter subunit IIC | - |
| ABU995_RS01675 (ABU995_01675) | - | 209137..210031 (-) | 895 | Protein_192 | IS256 family transposase | - |
| ABU995_RS01680 (ABU995_01680) | - | 210152..210796 (+) | 645 | WP_002377952.1 | IS6 family transposase | - |
| ABU995_RS01685 (ABU995_01685) | - | 210969..211283 (+) | 315 | WP_002403043.1 | hypothetical protein | - |
| ABU995_RS01690 (ABU995_01690) | cylR2 | 211621..211821 (-) | 201 | WP_002370931.1 | cytolysin regulator CylR2 | - |
| ABU995_RS01695 (ABU995_01695) | cylL-L | 212225..212431 (+) | 207 | WP_002358485.1 | lanthipeptide cytolysin subunit CylL-L | - |
| ABU995_RS01700 (ABU995_01700) | cylL-S | 212465..212656 (+) | 192 | WP_002358181.1 | lanthipeptide cytolysin subunit CylL-S | - |
| ABU995_RS01705 (ABU995_01705) | - | 212717..215698 (+) | 2982 | WP_002370929.1 | type 2 lanthipeptide synthetase LanM family protein | - |
| ABU995_RS01710 (ABU995_01710) | - | 215710..217854 (+) | 2145 | WP_002370927.1 | peptidase domain-containing ABC transporter | - |
| ABU995_RS01715 (ABU995_01715) | - | 217851..219089 (+) | 1239 | WP_002368283.1 | S8 family serine peptidase | - |
| ABU995_RS01720 (ABU995_01720) | - | 219090..220073 (+) | 984 | WP_002368282.1 | site-2 protease family protein | - |
| ABU995_RS01725 (ABU995_01725) | - | 220576..222264 (+) | 1689 | WP_010706730.1 | DNA/RNA helicase domain-containing protein | - |
| ABU995_RS01730 (ABU995_01730) | - | 222409..223029 (+) | 621 | WP_002404683.1 | recombinase family protein | - |
| ABU995_RS01735 (ABU995_01735) | - | 223172..223897 (+) | 726 | WP_002358492.1 | hypothetical protein | - |
| ABU995_RS01740 (ABU995_01740) | - | 223942..224109 (+) | 168 | WP_002358494.1 | type II toxin-antitoxin system RelB/DinJ family antitoxin | - |
| ABU995_RS01745 (ABU995_01745) | - | 224471..224593 (-) | 123 | WP_256332644.1 | hypothetical protein | - |
| ABU995_RS01750 (ABU995_01750) | - | 224697..224897 (+) | 201 | WP_002404680.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 152 a.a. Molecular weight: 17179.08 Da Isoelectric Point: 4.6511
>NTDB_id=1012223 ABU995_RS01570 WP_002365911.1 189605..190063(+) (ssb) [Enterococcus faecalis strain 10033598-2]
MINNVTLVGRLTKDPDLRYTQSGTAVGQFTLAINRNFTNANNEREADFINCVIWRKAAESLANYATKGTLIGLTGRIQTR
NYENQQGQRIYVTEVVTESFQLLESREVNEQRKEQATGKATFDKQSMDKPDPLDPFSPENSIVDISDNDLPF
MINNVTLVGRLTKDPDLRYTQSGTAVGQFTLAINRNFTNANNEREADFINCVIWRKAAESLANYATKGTLIGLTGRIQTR
NYENQQGQRIYVTEVVTESFQLLESREVNEQRKEQATGKATFDKQSMDKPDPLDPFSPENSIVDISDNDLPF
Nucleotide
Download Length: 459 bp
>NTDB_id=1012223 ABU995_RS01570 WP_002365911.1 189605..190063(+) (ssb) [Enterococcus faecalis strain 10033598-2]
TTGATTAATAACGTTACATTAGTTGGACGATTAACCAAAGACCCAGATTTAAGGTATACGCAAAGTGGAACAGCCGTAGG
TCAATTTACGTTGGCCATTAATCGCAACTTTACCAATGCTAACAATGAAAGGGAAGCAGATTTTATCAACTGTGTTATTT
GGCGGAAAGCTGCAGAGTCATTAGCAAATTATGCAACAAAAGGGACTCTGATCGGTTTAACTGGTCGCATTCAAACAAGA
AACTATGAGAATCAACAAGGCCAGCGTATTTATGTAACTGAGGTTGTCACAGAAAGCTTCCAACTATTAGAATCAAGAGA
AGTAAACGAGCAACGAAAAGAACAGGCTACAGGTAAAGCTACGTTTGATAAACAGTCAATGGATAAACCTGATCCTCTGG
ATCCATTTTCGCCAGAAAATAGCATAGTGGATATTTCTGATAATGACCTGCCGTTTTAA
TTGATTAATAACGTTACATTAGTTGGACGATTAACCAAAGACCCAGATTTAAGGTATACGCAAAGTGGAACAGCCGTAGG
TCAATTTACGTTGGCCATTAATCGCAACTTTACCAATGCTAACAATGAAAGGGAAGCAGATTTTATCAACTGTGTTATTT
GGCGGAAAGCTGCAGAGTCATTAGCAAATTATGCAACAAAAGGGACTCTGATCGGTTTAACTGGTCGCATTCAAACAAGA
AACTATGAGAATCAACAAGGCCAGCGTATTTATGTAACTGAGGTTGTCACAGAAAGCTTCCAACTATTAGAATCAAGAGA
AGTAAACGAGCAACGAAAAGAACAGGCTACAGGTAAAGCTACGTTTGATAAACAGTCAATGGATAAACCTGATCCTCTGG
ATCCATTTTCGCCAGAAAATAGCATAGTGGATATTTCTGATAATGACCTGCCGTTTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
56.471 |
100 |
0.632 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
47.283 |
100 |
0.572 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
56.604 |
69.737 |
0.395 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
50 |
76.316 |
0.382 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
53.774 |
69.737 |
0.375 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
49.138 |
76.316 |
0.375 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
48.276 |
76.316 |
0.368 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
48.276 |
76.316 |
0.368 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
48.276 |
76.316 |
0.368 |
| ssbB/cilA | Streptococcus mitis SK321 |
48.276 |
76.316 |
0.368 |