Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | ABU998_RS00925 | Genome accession | NZ_CP159108 |
| Coordinates | 167858..168316 (+) | Length | 152 a.a. |
| NCBI ID | WP_002365911.1 | Uniprot ID | Q8VT46 |
| Organism | Enterococcus faecalis strain 10033598-1 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 154193..204304 | 167858..168316 | within | 0 |
Gene organization within MGE regions
Location: 154193..204304
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ABU998_RS00850 (ABU998_00850) | - | 154592..154947 (+) | 356 | Protein_140 | sigma-70 family RNA polymerase sigma factor | - |
| ABU998_RS00855 (ABU998_00855) | - | 156019..159936 (+) | 3918 | WP_353630042.1 | LPXTG-anchored aggregation substance | - |
| ABU998_RS00860 (ABU998_00860) | prgU | 159998..160354 (+) | 357 | WP_010714280.1 | pheromone response system RNA-binding regulator PrgU | - |
| ABU998_RS00865 (ABU998_00865) | - | 160376..160762 (+) | 387 | WP_002364326.1 | hypothetical protein | - |
| ABU998_RS00870 (ABU998_00870) | - | 160908..161168 (+) | 261 | WP_002370667.1 | hypothetical protein | - |
| ABU998_RS00875 (ABU998_00875) | - | 161179..162057 (+) | 879 | WP_002377931.1 | hypothetical protein | - |
| ABU998_RS00880 (ABU998_00880) | - | 162077..162937 (+) | 861 | WP_010710128.1 | LPXTG cell wall anchor domain-containing protein | - |
| ABU998_RS00885 (ABU998_00885) | - | 162963..164234 (+) | 1272 | WP_002415819.1 | CHAP domain-containing protein | - |
| ABU998_RS00890 (ABU998_00890) | - | 164237..164854 (+) | 618 | WP_002377936.1 | hypothetical protein | - |
| ABU998_RS00895 (ABU998_00895) | - | 164838..165254 (+) | 417 | WP_002401419.1 | thioredoxin domain-containing protein | - |
| ABU998_RS00900 (ABU998_00900) | - | 165254..165568 (+) | 315 | WP_002360796.1 | hypothetical protein | - |
| ABU998_RS00905 (ABU998_00905) | - | 165561..166595 (+) | 1035 | WP_002403100.1 | conjugal transfer protein | - |
| ABU998_RS00910 (ABU998_00910) | - | 166600..166860 (+) | 261 | WP_010706916.1 | hypothetical protein | - |
| ABU998_RS00915 (ABU998_00915) | - | 166860..167249 (+) | 390 | WP_002360791.1 | TcpE family conjugal transfer membrane protein | - |
| ABU998_RS00920 (ABU998_00920) | - | 167281..167763 (+) | 483 | WP_002377938.1 | hypothetical protein | - |
| ABU998_RS00925 (ABU998_00925) | ssb | 167858..168316 (+) | 459 | WP_002365911.1 | single-stranded DNA-binding protein | Machinery gene |
| ABU998_RS00930 (ABU998_00930) | - | 168421..170913 (+) | 2493 | WP_002377939.1 | ATP-binding protein | - |
| ABU998_RS00935 (ABU998_00935) | - | 170870..171268 (+) | 399 | WP_002370287.1 | DUF4923 family protein | - |
| ABU998_RS00940 (ABU998_00940) | - | 171281..173626 (+) | 2346 | WP_002377940.1 | CD3337/EF1877 family mobilome membrane protein | - |
| ABU998_RS00945 (ABU998_00945) | - | 173613..175871 (+) | 2259 | WP_010710132.1 | TraM recognition domain-containing protein | - |
| ABU998_RS00950 (ABU998_00950) | - | 176394..177179 (+) | 786 | WP_002360778.1 | replication-relaxation family protein | - |
| ABU998_RS00955 (ABU998_00955) | - | 177185..177673 (+) | 489 | WP_010710133.1 | hypothetical protein | - |
| ABU998_RS00960 (ABU998_00960) | - | 178265..178531 (+) | 267 | WP_002377947.1 | hypothetical protein | - |
| ABU998_RS00965 (ABU998_00965) | - | 178564..179064 (+) | 501 | WP_002360775.1 | DnaJ domain-containing protein | - |
| ABU998_RS00970 (ABU998_00970) | - | 179077..179325 (+) | 249 | WP_002360773.1 | DUF3850 domain-containing protein | - |
| ABU998_RS00975 (ABU998_00975) | - | 179401..179817 (+) | 417 | WP_010710134.1 | single-stranded DNA-binding protein | - |
| ABU998_RS00980 (ABU998_00980) | - | 179841..180425 (+) | 585 | WP_002377949.1 | thermonuclease family protein | - |
| ABU998_RS00985 (ABU998_00985) | - | 180536..180802 (+) | 267 | WP_002369771.1 | type II toxin-antitoxin system RelB/DinJ family antitoxin | - |
| ABU998_RS00990 (ABU998_00990) | - | 180795..181070 (+) | 276 | WP_002360769.1 | type II toxin-antitoxin system YafQ family toxin | - |
| ABU998_RS00995 (ABU998_00995) | - | 181261..181905 (-) | 645 | WP_002377952.1 | IS6 family transposase | - |
| ABU998_RS01000 (ABU998_01000) | bsh | 182129..183103 (+) | 975 | WP_002355428.1 | choloylglycine hydrolase | - |
| ABU998_RS01005 (ABU998_01005) | - | 183772..184380 (-) | 609 | Protein_171 | IS6 family transposase | - |
| ABU998_RS01010 (ABU998_01010) | - | 184412..184597 (-) | 186 | WP_002358660.1 | hypothetical protein | - |
| ABU998_RS01015 (ABU998_01015) | - | 184687..184956 (+) | 270 | Protein_173 | LPXTG cell wall anchor domain-containing protein | - |
| ABU998_RS01020 (ABU998_01020) | - | 185084..186022 (+) | 939 | WP_002370935.1 | 2-dehydropantoate 2-reductase | - |
| ABU998_RS01025 (ABU998_01025) | - | 186048..187085 (+) | 1038 | WP_002355369.1 | PTS sugar transporter subunit IIC | - |
| ABU998_RS01030 (ABU998_01030) | - | 187390..188284 (-) | 895 | Protein_176 | IS256 family transposase | - |
| ABU998_RS01035 (ABU998_01035) | - | 188405..189049 (+) | 645 | WP_002377952.1 | IS6 family transposase | - |
| ABU998_RS01040 (ABU998_01040) | - | 189222..189536 (+) | 315 | WP_002403043.1 | hypothetical protein | - |
| ABU998_RS01045 (ABU998_01045) | cylR2 | 189874..190074 (-) | 201 | WP_002370931.1 | cytolysin regulator CylR2 | - |
| ABU998_RS01050 (ABU998_01050) | cylL-L | 190478..190684 (+) | 207 | WP_002358485.1 | lanthipeptide cytolysin subunit CylL-L | - |
| ABU998_RS01055 (ABU998_01055) | cylL-S | 190718..190909 (+) | 192 | WP_002358181.1 | lanthipeptide cytolysin subunit CylL-S | - |
| ABU998_RS01060 (ABU998_01060) | - | 190970..193951 (+) | 2982 | WP_002370929.1 | type 2 lanthipeptide synthetase LanM family protein | - |
| ABU998_RS01065 (ABU998_01065) | - | 193963..196107 (+) | 2145 | WP_002370927.1 | peptidase domain-containing ABC transporter | - |
| ABU998_RS01070 (ABU998_01070) | - | 196104..197342 (+) | 1239 | WP_002368283.1 | S8 family serine peptidase | - |
| ABU998_RS01075 (ABU998_01075) | - | 197343..198326 (+) | 984 | WP_002368282.1 | site-2 protease family protein | - |
| ABU998_RS01080 (ABU998_01080) | - | 198829..200517 (+) | 1689 | WP_010706730.1 | DNA/RNA helicase domain-containing protein | - |
| ABU998_RS01085 (ABU998_01085) | - | 200662..201282 (+) | 621 | WP_002404683.1 | recombinase family protein | - |
| ABU998_RS01090 (ABU998_01090) | - | 201425..202150 (+) | 726 | WP_002358492.1 | hypothetical protein | - |
| ABU998_RS01095 (ABU998_01095) | - | 202195..202362 (+) | 168 | WP_002358494.1 | type II toxin-antitoxin system RelB/DinJ family antitoxin | - |
| ABU998_RS01100 (ABU998_01100) | - | 202724..202846 (-) | 123 | WP_256332644.1 | hypothetical protein | - |
| ABU998_RS01105 (ABU998_01105) | - | 202950..203150 (+) | 201 | WP_002404680.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 152 a.a. Molecular weight: 17179.08 Da Isoelectric Point: 4.6511
>NTDB_id=1012184 ABU998_RS00925 WP_002365911.1 167858..168316(+) (ssb) [Enterococcus faecalis strain 10033598-1]
MINNVTLVGRLTKDPDLRYTQSGTAVGQFTLAINRNFTNANNEREADFINCVIWRKAAESLANYATKGTLIGLTGRIQTR
NYENQQGQRIYVTEVVTESFQLLESREVNEQRKEQATGKATFDKQSMDKPDPLDPFSPENSIVDISDNDLPF
MINNVTLVGRLTKDPDLRYTQSGTAVGQFTLAINRNFTNANNEREADFINCVIWRKAAESLANYATKGTLIGLTGRIQTR
NYENQQGQRIYVTEVVTESFQLLESREVNEQRKEQATGKATFDKQSMDKPDPLDPFSPENSIVDISDNDLPF
Nucleotide
Download Length: 459 bp
>NTDB_id=1012184 ABU998_RS00925 WP_002365911.1 167858..168316(+) (ssb) [Enterococcus faecalis strain 10033598-1]
TTGATTAATAACGTTACATTAGTTGGACGATTAACCAAAGACCCAGATTTAAGGTATACGCAAAGTGGAACAGCCGTAGG
TCAATTTACGTTGGCCATTAATCGCAACTTTACCAATGCTAACAATGAAAGGGAAGCAGATTTTATCAACTGTGTTATTT
GGCGGAAAGCTGCAGAGTCATTAGCAAATTATGCAACAAAAGGGACTCTGATCGGTTTAACTGGTCGCATTCAAACAAGA
AACTATGAGAATCAACAAGGCCAGCGTATTTATGTAACTGAGGTTGTCACAGAAAGCTTCCAACTATTAGAATCAAGAGA
AGTAAACGAGCAACGAAAAGAACAGGCTACAGGTAAAGCTACGTTTGATAAACAGTCAATGGATAAACCTGATCCTCTGG
ATCCATTTTCGCCAGAAAATAGCATAGTGGATATTTCTGATAATGACCTGCCGTTTTAA
TTGATTAATAACGTTACATTAGTTGGACGATTAACCAAAGACCCAGATTTAAGGTATACGCAAAGTGGAACAGCCGTAGG
TCAATTTACGTTGGCCATTAATCGCAACTTTACCAATGCTAACAATGAAAGGGAAGCAGATTTTATCAACTGTGTTATTT
GGCGGAAAGCTGCAGAGTCATTAGCAAATTATGCAACAAAAGGGACTCTGATCGGTTTAACTGGTCGCATTCAAACAAGA
AACTATGAGAATCAACAAGGCCAGCGTATTTATGTAACTGAGGTTGTCACAGAAAGCTTCCAACTATTAGAATCAAGAGA
AGTAAACGAGCAACGAAAAGAACAGGCTACAGGTAAAGCTACGTTTGATAAACAGTCAATGGATAAACCTGATCCTCTGG
ATCCATTTTCGCCAGAAAATAGCATAGTGGATATTTCTGATAATGACCTGCCGTTTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
56.471 |
100 |
0.632 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
47.283 |
100 |
0.572 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
56.604 |
69.737 |
0.395 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
50 |
76.316 |
0.382 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
53.774 |
69.737 |
0.375 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
49.138 |
76.316 |
0.375 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
48.276 |
76.316 |
0.368 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
48.276 |
76.316 |
0.368 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
48.276 |
76.316 |
0.368 |
| ssbB/cilA | Streptococcus mitis SK321 |
48.276 |
76.316 |
0.368 |