Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   ABNQ20_RS21250 Genome accession   NZ_CP158051
Coordinates   4581169..4581804 (-) Length   211 a.a.
NCBI ID   WP_003091163.1    Uniprot ID   A0A0H2ZBU7
Organism   Pseudomonas aeruginosa strain P1110     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4576169..4586804
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABNQ20_RS21220 (ABNQ20_21215) murB 4577267..4578286 (-) 1020 WP_003119807.1 UDP-N-acetylmuramate dehydrogenase -
  ABNQ20_RS21225 (ABNQ20_21220) - 4578283..4578747 (-) 465 WP_003138590.1 low molecular weight protein-tyrosine-phosphatase -
  ABNQ20_RS21230 (ABNQ20_21225) kdsB 4578747..4579511 (-) 765 WP_003130694.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  ABNQ20_RS21235 (ABNQ20_21230) - 4579511..4579696 (-) 186 WP_003091157.1 Trm112 family protein -
  ABNQ20_RS21240 (ABNQ20_21235) lpxK 4579734..4580732 (-) 999 WP_353629168.1 tetraacyldisaccharide 4'-kinase -
  ABNQ20_RS21245 (ABNQ20_21240) - 4580732..4581172 (-) 441 WP_003091161.1 biopolymer transporter ExbD -
  ABNQ20_RS21250 (ABNQ20_21245) exbB 4581169..4581804 (-) 636 WP_003091163.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  ABNQ20_RS21255 (ABNQ20_21250) comA 4581877..4584102 (-) 2226 WP_003138588.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ABNQ20_RS21260 (ABNQ20_21255) - 4584233..4584766 (+) 534 WP_003091165.1 DUF2062 domain-containing protein -
  ABNQ20_RS21265 (ABNQ20_21260) - 4584854..4586098 (-) 1245 WP_003105198.1 lipoprotein-releasing ABC transporter permease subunit -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22890.06 Da        Isoelectric Point: 6.7278

>NTDB_id=1009696 ABNQ20_RS21250 WP_003091163.1 4581169..4581804(-) (exbB) [Pseudomonas aeruginosa strain P1110]
MWELVQAGGWMMLPIILSSIAATAIVAERLWTLRKSRVAPPELLGQVWKQIKGKQLSAQKLKDLRANSPLGEILAAGLAN
SKHGREIMKECIEEAASGVIHELERYLNALGTIAAMAPLLGLLGTVFGMIQIFGAFMDNGMANSPMLAAGISKALITTAA
GLLVAIPAVFFHRYLLRRVDELVIAMEQEAIKLVEVVQGDREVDYVEEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=1009696 ABNQ20_RS21250 WP_003091163.1 4581169..4581804(-) (exbB) [Pseudomonas aeruginosa strain P1110]
GTGTGGGAACTGGTTCAAGCCGGCGGCTGGATGATGCTGCCGATCATTCTGAGTTCGATCGCCGCCACCGCCATCGTCGC
GGAGCGCCTGTGGACGCTGCGCAAGAGCCGCGTCGCGCCGCCCGAGCTGCTCGGCCAGGTGTGGAAGCAGATCAAGGGCA
AGCAACTGAGCGCCCAGAAGCTCAAGGACCTGCGCGCCAACTCGCCGCTGGGAGAGATCCTCGCCGCCGGCCTGGCCAAC
TCCAAGCACGGTCGCGAGATCATGAAGGAGTGCATCGAGGAGGCTGCTTCCGGTGTCATCCACGAGCTGGAGCGCTACCT
CAACGCCCTCGGCACCATCGCCGCGATGGCGCCGCTGCTGGGCCTGCTGGGCACGGTGTTCGGCATGATCCAGATCTTCG
GCGCCTTCATGGACAACGGCATGGCCAACTCGCCGATGCTCGCCGCGGGCATCTCCAAGGCATTGATCACCACCGCCGCC
GGCCTGCTGGTGGCGATTCCGGCGGTGTTCTTCCATCGCTACCTGCTGCGGCGGGTCGACGAACTGGTGATCGCCATGGA
GCAGGAGGCCATCAAGCTGGTGGAAGTGGTGCAGGGCGATCGTGAAGTCGACTACGTCGAGGAAGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZBU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

81.043

100

0.81

Multiple sequence alignment