Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | D934_RS12510 | Genome accession | NZ_CP006696 |
| Coordinates | 2699620..2700072 (+) | Length | 150 a.a. |
| NCBI ID | WP_020851240.1 | Uniprot ID | - |
| Organism | Xylella fastidiosa subsp. sandyi Ann-1 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2694620..2705072
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| D934_RS12480 (D934_13455) | coaE | 2694720..2695343 (-) | 624 | WP_020851236.1 | dephospho-CoA kinase | - |
| D934_RS12485 (D934_13460) | pilD | 2695355..2696218 (-) | 864 | WP_004084594.1 | A24 family peptidase | Machinery gene |
| D934_RS12490 (D934_13465) | pilC | 2696225..2697427 (-) | 1203 | WP_010894959.1 | type II secretion system F family protein | Machinery gene |
| D934_RS12495 (D934_13470) | pilA/pilAI | 2697869..2698315 (+) | 447 | WP_020851238.1 | pilin | Machinery gene |
| D934_RS12500 (D934_13475) | - | 2698554..2698781 (-) | 228 | WP_020851239.1 | hypothetical protein | - |
| D934_RS12510 (D934_13485) | pilA | 2699620..2700072 (+) | 453 | WP_020851240.1 | pilin | Machinery gene |
| D934_RS12515 (D934_13490) | pilB | 2700919..2702652 (+) | 1734 | WP_020851241.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| D934_RS12520 (D934_13495) | - | 2702746..2704158 (-) | 1413 | WP_020851242.1 | sigma-54 dependent transcriptional regulator | - |
Sequence
Protein
Download Length: 150 a.a. Molecular weight: 15414.80 Da Isoelectric Point: 8.5081
>NTDB_id=100967 D934_RS12510 WP_020851240.1 2699620..2700072(+) (pilA) [Xylella fastidiosa subsp. sandyi Ann-1]
MKKQQGFTLIELMIVIAIIAILAAIALPMYQNYVAKSQVTAGLAEITPGKAQAEIRIAEARPTTTATDIGLRTATARCNT
IAVSIVTDNPSTIICTLVGNAQVNGQTIRWTRAVDNAAGTRDGGLWTCTTTVAEALRPGGCGATAAAGGG
MKKQQGFTLIELMIVIAIIAILAAIALPMYQNYVAKSQVTAGLAEITPGKAQAEIRIAEARPTTTATDIGLRTATARCNT
IAVSIVTDNPSTIICTLVGNAQVNGQTIRWTRAVDNAAGTRDGGLWTCTTTVAEALRPGGCGATAAAGGG
Nucleotide
Download Length: 453 bp
>NTDB_id=100967 D934_RS12510 WP_020851240.1 2699620..2700072(+) (pilA) [Xylella fastidiosa subsp. sandyi Ann-1]
ATGAAAAAGCAACAAGGCTTCACTTTGATCGAGCTGATGATCGTCATTGCGATCATCGCCATCCTGGCAGCGATCGCTCT
GCCGATGTACCAAAATTATGTGGCCAAGTCTCAAGTCACAGCGGGACTGGCCGAAATTACACCCGGCAAAGCACAAGCCG
AAATCCGTATTGCCGAGGCAAGGCCAACAACTACTGCGACCGATATCGGACTGCGCACCGCGACTGCTCGTTGCAACACC
ATTGCTGTCAGCATCGTGACCGATAATCCAAGCACAATCATATGTACGCTTGTTGGTAATGCCCAAGTCAACGGTCAAAC
CATTAGATGGACTCGCGCCGTCGATAACGCCGCAGGCACAAGGGATGGGGGTCTGTGGACCTGTACCACAACCGTTGCCG
AAGCATTGAGACCAGGAGGCTGCGGTGCTACTGCTGCTGCTGGTGGTGGTTAA
ATGAAAAAGCAACAAGGCTTCACTTTGATCGAGCTGATGATCGTCATTGCGATCATCGCCATCCTGGCAGCGATCGCTCT
GCCGATGTACCAAAATTATGTGGCCAAGTCTCAAGTCACAGCGGGACTGGCCGAAATTACACCCGGCAAAGCACAAGCCG
AAATCCGTATTGCCGAGGCAAGGCCAACAACTACTGCGACCGATATCGGACTGCGCACCGCGACTGCTCGTTGCAACACC
ATTGCTGTCAGCATCGTGACCGATAATCCAAGCACAATCATATGTACGCTTGTTGGTAATGCCCAAGTCAACGGTCAAAC
CATTAGATGGACTCGCGCCGTCGATAACGCCGCAGGCACAAGGGATGGGGGTCTGTGGACCTGTACCACAACCGTTGCCG
AAGCATTGAGACCAGGAGGCTGCGGTGCTACTGCTGCTGCTGGTGGTGGTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
44.079 |
100 |
0.447 |
| pilA | Vibrio cholerae strain A1552 |
44.079 |
100 |
0.447 |
| pilA | Vibrio cholerae C6706 |
44.079 |
100 |
0.447 |
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
45.833 |
96 |
0.44 |
| pilA | Acinetobacter baumannii strain A118 |
43.836 |
97.333 |
0.427 |
| pilA | Pseudomonas aeruginosa PAK |
38.217 |
100 |
0.4 |
| pilA/pilAII | Pseudomonas stutzeri DSM 10701 |
41.429 |
93.333 |
0.387 |
| pilA | Vibrio parahaemolyticus RIMD 2210633 |
40.141 |
94.667 |
0.38 |
| comP | Acinetobacter baylyi ADP1 |
35.762 |
100 |
0.36 |