Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ABJ384_RS13385 Genome accession   NZ_CP157981
Coordinates   2772474..2773703 (+) Length   409 a.a.
NCBI ID   WP_349927895.1    Uniprot ID   A0AAU7SW88
Organism   Acinetobacter sp. A1-4-2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2767474..2778703
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABJ384_RS13345 (ABJ384_13335) rimP 2768003..2768527 (-) 525 WP_086195210.1 ribosome maturation factor RimP -
  ABJ384_RS13370 (ABJ384_13360) secG 2769320..2769649 (-) 330 WP_349927889.1 preprotein translocase subunit SecG -
  ABJ384_RS13375 (ABJ384_13365) tpiA 2769663..2770454 (-) 792 WP_349927891.1 triose-phosphate isomerase -
  ABJ384_RS13380 (ABJ384_13370) pilB 2770734..2772446 (+) 1713 WP_349927893.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ABJ384_RS13385 (ABJ384_13375) pilC 2772474..2773703 (+) 1230 WP_349927895.1 type II secretion system F family protein Machinery gene
  ABJ384_RS13390 (ABJ384_13380) pilD 2773721..2774584 (+) 864 WP_349927896.1 A24 family peptidase Machinery gene
  ABJ384_RS13395 (ABJ384_13385) coaE 2774601..2775191 (+) 591 WP_349927898.1 dephospho-CoA kinase -
  ABJ384_RS13400 (ABJ384_13390) - 2775211..2776128 (-) 918 WP_349927900.1 DMT family transporter -
  ABJ384_RS13405 (ABJ384_13395) rlmB 2776160..2776909 (-) 750 WP_086195202.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  ABJ384_RS13410 (ABJ384_13400) - 2777051..2777374 (-) 324 WP_086195201.1 pyrimidine/purine nucleoside phosphorylase -

Sequence

Protein


Download         Length: 409 a.a.        Molecular weight: 44940.36 Da        Isoelectric Point: 9.7547

>NTDB_id=1009489 ABJ384_RS13385 WP_349927895.1 2772474..2773703(+) (pilC) [Acinetobacter sp. A1-4-2]
MAVKKAQMMPVFSYEGVDRKGEKLKGELPARNMALAKVTLRKQGITIKHIREKRKNILEGLMKKKVSTLDITIFTRQLAT
MMKAGVPLVQSFEIVAEGLENPSMRDVVLGIKGEVEGGNTFAGALKKYPQYFDNLFCSLVESGEQSGALETMLDRVAIYK
EKSELLKQKIKKAMKYPATVIVVAVIVTIILMVKVVPVFQELFSSFGADLPAFTQMVVNMSEWMQKYWFILIIAIGAMIA
GFLEAKKRSKKFRDFLDKAALKAPIFGDLVYKAIIARYSRTLATTFAAGVPLIDALESTAGATNNCVYEAAVMKIRDDVA
TGQQLQFAMRVTNKFPSMAVQMVAIGEESGALDAMLDKVATHFENEVDNAVDGLTSMMEPLIMAVLGVLVGGLVIAMYLP
IFQMGSVVG

Nucleotide


Download         Length: 1230 bp        

>NTDB_id=1009489 ABJ384_RS13385 WP_349927895.1 2772474..2773703(+) (pilC) [Acinetobacter sp. A1-4-2]
ATGGCTGTCAAAAAAGCACAGATGATGCCCGTCTTCAGTTATGAAGGTGTTGATCGTAAAGGGGAAAAACTTAAAGGGGA
ACTTCCTGCGCGGAATATGGCACTTGCTAAAGTGACTTTACGTAAGCAGGGGATCACCATTAAACATATTCGGGAAAAAC
GTAAAAATATTCTCGAAGGTTTAATGAAAAAGAAAGTGTCCACCTTGGATATCACGATTTTTACCCGCCAGCTGGCCACC
ATGATGAAAGCTGGTGTACCACTTGTGCAAAGCTTTGAAATTGTTGCGGAAGGCCTGGAAAATCCATCCATGCGTGATGT
GGTGTTAGGCATTAAAGGTGAGGTTGAAGGCGGGAATACCTTTGCTGGTGCACTTAAAAAATATCCGCAATATTTTGACA
ACCTGTTCTGTTCTTTGGTGGAATCTGGTGAACAGTCTGGTGCCTTGGAAACCATGCTGGATCGTGTCGCGATTTATAAA
GAAAAGAGCGAACTATTAAAGCAAAAAATTAAAAAAGCTATGAAATATCCAGCCACGGTTATTGTGGTTGCCGTGATCGT
GACCATTATTTTGATGGTTAAAGTGGTTCCTGTTTTCCAAGAATTATTTAGTTCATTTGGTGCCGATTTACCTGCCTTTA
CCCAAATGGTGGTGAATATGTCGGAATGGATGCAAAAATACTGGTTTATTCTGATTATTGCCATTGGTGCGATGATTGCC
GGATTTCTCGAAGCAAAAAAACGCAGTAAGAAATTTCGTGATTTTCTTGATAAAGCAGCACTCAAAGCGCCTATTTTTGG
TGACCTGGTCTATAAAGCCATTATTGCCCGTTATAGTCGTACTCTAGCAACCACCTTTGCGGCCGGTGTTCCCTTGATTG
ATGCCTTGGAATCCACTGCAGGCGCAACTAACAATTGTGTTTATGAAGCAGCGGTAATGAAAATCCGTGATGATGTAGCC
ACAGGCCAACAACTACAATTTGCCATGCGTGTCACCAACAAATTTCCGTCTATGGCTGTACAAATGGTGGCGATTGGTGA
AGAGTCAGGTGCACTGGATGCCATGCTGGATAAAGTCGCAACACATTTCGAAAATGAAGTCGACAATGCAGTAGACGGCT
TAACCTCGATGATGGAACCCCTCATTATGGCCGTGCTGGGTGTGCTGGTCGGTGGTCTGGTGATTGCCATGTATCTTCCA
ATTTTCCAAATGGGCTCAGTCGTGGGCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

89.706

99.756

0.895
  pilC Acinetobacter baylyi ADP1

85.049

99.756

0.848
  pilC Pseudomonas stutzeri DSM 10701

60.494

99.022

0.599
  pilC Legionella pneumophila strain ERS1305867

52.84

99.022

0.523
  pilG Neisseria gonorrhoeae MS11

46.985

97.311

0.457
  pilG Neisseria meningitidis 44/76-A

46.734

97.311

0.455
  pilC Vibrio cholerae strain A1552

42.787

100

0.428
  pilC Vibrio campbellii strain DS40M4

41.855

97.555

0.408

Multiple sequence alignment