Detailed information NTG1009490

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ABJ384_RS13390
• Genome accession: NZ_CP157981
• Coordinates: 2773721..2774584 (+)
• Length: 287 a.a.
• NCBI ID: WP_349927896.1
• Uniprot ID: A0AAU7SW12
• Organism: Acinetobacter sp. A1-4-2
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2768721..2779584

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABJ384_RS13370 (ABJ384_13360)	secG	2769320..2769649 (-)	330	WP_349927889.1	preprotein translocase subunit SecG	-
ABJ384_RS13375 (ABJ384_13365)	tpiA	2769663..2770454 (-)	792	WP_349927891.1	triose-phosphate isomerase	-
ABJ384_RS13380 (ABJ384_13370)	pilB	2770734..2772446 (+)	1713	WP_349927893.1	type IV-A pilus assembly ATPase PilB	Machinery gene
ABJ384_RS13385 (ABJ384_13375)	pilC	2772474..2773703 (+)	1230	WP_349927895.1	type II secretion system F family protein	Machinery gene
ABJ384_RS13390 (ABJ384_13380)	pilD	2773721..2774584 (+)	864	WP_349927896.1	A24 family peptidase	Machinery gene
ABJ384_RS13395 (ABJ384_13385)	coaE	2774601..2775191 (+)	591	WP_349927898.1	dephospho-CoA kinase	-
ABJ384_RS13400 (ABJ384_13390)	-	2775211..2776128 (-)	918	WP_349927900.1	DMT family transporter	-
ABJ384_RS13405 (ABJ384_13395)	rlmB	2776160..2776909 (-)	750	WP_086195202.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
ABJ384_RS13410 (ABJ384_13400)	-	2777051..2777374 (-)	324	WP_086195201.1	pyrimidine/purine nucleoside phosphorylase	-
ABJ384_RS13415 (ABJ384_13405)	recN	2777889..2779550 (+)	1662	WP_349927902.1	DNA repair protein RecN	-

Sequence

Protein

• Length: 287 a.a.
• Molecular weight: 32253.75 Da
• Isoelectric Point: 8.2641

>NTDB_id=1009490 ABJ384_RS13390 WP_349927896.1 2773721..2774584(+) (pilD) [Acinetobacter sp. A1-4-2]
MLNDVIVFLQINPTALYIAVGLFSLCIGSFLNVVIYRTPKMMEQEWRQDCQILLHPEQAIIDEKKITLSKPDSTCPKCQT
PIRWYQNIPVISWLFLRGKCGSCKNPISIRYPLIELLTAACSLIIVAVFGPTLQMLFGLILTWVLIALTFIDFDTQLLPD
RYTLTLAALGLGINSYSLYTSPTSAIWGYIIGFLCLWIVYYLFKMITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSS
FVGAVIGIILLKVRKENQPFAFGPYIAIAGWIAFIWGEQIMKIYLGQ

Nucleotide

• Length: 864 bp

>NTDB_id=1009490 ABJ384_RS13390 WP_349927896.1 2773721..2774584(+) (pilD) [Acinetobacter sp. A1-4-2]
TTGTTAAATGACGTTATCGTATTTTTGCAAATCAACCCAACTGCTTTATATATTGCAGTTGGGCTTTTTAGTCTCTGTAT
CGGCAGTTTTCTCAATGTCGTGATTTATCGAACGCCGAAAATGATGGAGCAAGAGTGGCGGCAGGATTGTCAAATATTGC
TGCATCCCGAACAGGCCATTATTGACGAAAAAAAAATCACCCTCAGCAAGCCTGATTCAACCTGTCCAAAATGCCAAACA
CCCATTCGCTGGTATCAGAATATTCCTGTCATCAGCTGGCTGTTTTTAAGGGGCAAATGCGGTTCTTGCAAAAATCCGAT
CAGTATTCGCTATCCACTCATTGAATTGTTAACTGCAGCATGTTCCCTCATTATTGTGGCAGTCTTCGGCCCTACTCTGC
AGATGCTGTTTGGACTGATCCTCACTTGGGTGCTGATTGCACTGACCTTTATTGATTTTGATACCCAGCTTCTCCCAGAC
CGCTATACCTTAACTCTGGCCGCCTTAGGTTTGGGAATCAATAGTTATAGCCTCTATACCAGTCCAACCTCTGCCATCTG
GGGCTATATTATTGGTTTCCTGTGTTTGTGGATTGTCTATTATCTGTTTAAGATGATTACAGGTAAAGAAGGTATGGGCT
ATGGTGACTTTAAACTCCTGGCTGCCTTAGGTGCCTGGATGGGGCCATTGATGCTCCCATTGATCGTATTGCTCTCTTCT
TTCGTCGGCGCCGTGATTGGCATTATCCTGCTGAAAGTACGCAAAGAAAACCAGCCTTTTGCATTTGGTCCTTATATTGC
GATTGCCGGATGGATTGCTTTTATTTGGGGTGAGCAGATTATGAAAATATATTTAGGTCAGTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (139-248)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (22-128)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter baumannii D1279779	80.351	99.303	0.798
pilD	Acinetobacter nosocomialis M2	80	99.303	0.794
pilD	Vibrio campbellii strain DS40M4	53.684	99.303	0.533
pilD	Vibrio cholerae strain A1552	55.97	93.38	0.523
pilD	Neisseria gonorrhoeae MS11	46.691	94.774	0.443