Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ABNP45_RS26975 Genome accession   NZ_CP157871
Coordinates   5938236..5939453 (+) Length   405 a.a.
NCBI ID   WP_015637067.1    Uniprot ID   A0A2C9ETK4
Organism   Pseudomonas protegens strain H407     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5933236..5944453
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABNP45_RS26960 (ABNP45_26925) - 5933777..5936695 (+) 2919 WP_041119925.1 DUF748 domain-containing protein -
  ABNP45_RS26965 (ABNP45_26930) - 5936905..5937261 (-) 357 WP_011063519.1 BON domain-containing protein -
  ABNP45_RS26970 (ABNP45_26935) - 5937490..5937906 (-) 417 WP_041119926.1 pilin -
  ABNP45_RS26975 (ABNP45_26940) pilC 5938236..5939453 (+) 1218 WP_015637067.1 type II secretion system F family protein Machinery gene
  ABNP45_RS26980 (ABNP45_26945) pilD 5939456..5940328 (+) 873 WP_041119927.1 A24 family peptidase Machinery gene
  ABNP45_RS26985 (ABNP45_26950) coaE 5940325..5940948 (+) 624 WP_011063523.1 dephospho-CoA kinase -
  ABNP45_RS26990 (ABNP45_26955) yacG 5940945..5941148 (+) 204 WP_011063524.1 DNA gyrase inhibitor YacG -
  ABNP45_RS26995 (ABNP45_26960) - 5941168..5941383 (-) 216 WP_011063525.1 hypothetical protein -
  ABNP45_RS27000 (ABNP45_26965) - 5941447..5942136 (-) 690 WP_053153931.1 energy-coupling factor ABC transporter permease -
  ABNP45_RS27005 (ABNP45_26970) - 5942133..5942600 (-) 468 WP_053153934.1 hypothetical protein -
  ABNP45_RS27010 (ABNP45_26975) - 5942744..5943373 (+) 630 WP_011063528.1 DUF1780 domain-containing protein -
  ABNP45_RS27015 (ABNP45_26980) - 5943563..5943736 (+) 174 WP_232644495.1 DUF3094 family protein -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 43815.46 Da        Isoelectric Point: 10.5006

>NTDB_id=1008661 ABNP45_RS26975 WP_015637067.1 5938236..5939453(+) (pilC) [Pseudomonas protegens strain H407]
MAVKAPATSVYLWHGTDSQGRPLTGELSAATPALIRAQLRRQGITPTRVRRKPKGWLRLHQRVGARDIALLTRQLATLMQ
AGVPLLQSFDIIAESFEHPQMRQLLASLKRDIEAGSSLATALRRQPRHFDPLYCNLVDAGEQAGALDTLLERVATYKEKS
ENLKARLKKAMVYPLAVIGVAVVVSSILLLKVVPQFQSLFAGFNAELPLLTQWVIALSHFIQQQGALLLAAGVLGGLAAR
LAYQRSPSLRDRLDVGLLHMPLAGPLLHKSAVARYARTLATTFAAGVPLVQALDSVAGASGNPVFRQAVQRIRQQVAAGM
QLNFAMRASGVFPTMAIQMTAIGEESGTLDHLLEKVAIHYEVEVDNLVDSLTSLMEPLIMVVLGGIVGALVVAMYLPIFQ
LGTAI

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=1008661 ABNP45_RS26975 WP_015637067.1 5938236..5939453(+) (pilC) [Pseudomonas protegens strain H407]
ATGGCGGTAAAAGCACCCGCGACCAGTGTCTATCTCTGGCACGGCACCGACAGCCAGGGCCGCCCCCTCACTGGAGAACT
CAGCGCCGCGACCCCGGCCCTGATCAGGGCGCAATTGCGCAGACAGGGCATCACCCCAACCCGAGTCCGACGCAAACCCA
AGGGCTGGCTGCGCCTGCATCAGCGAGTAGGGGCACGGGACATTGCCCTGCTCACCCGGCAGTTGGCCACGCTGATGCAG
GCCGGGGTGCCGCTGCTGCAATCCTTCGACATCATTGCCGAAAGTTTCGAGCATCCGCAGATGCGTCAACTGCTAGCCAG
CCTCAAGCGCGACATCGAGGCCGGCTCCAGCCTGGCCACGGCATTGCGCAGACAGCCGCGCCACTTCGACCCGCTGTACT
GCAACCTGGTGGACGCCGGCGAGCAGGCCGGCGCCCTGGATACCCTGCTGGAAAGAGTCGCCACCTATAAGGAAAAGAGC
GAGAACCTGAAGGCGCGGCTGAAGAAAGCCATGGTCTATCCCTTGGCGGTGATCGGCGTGGCGGTCGTGGTCAGCAGCAT
CCTGCTGCTCAAGGTGGTCCCCCAGTTCCAGAGCTTGTTCGCCGGTTTCAATGCCGAGCTGCCACTGCTCACCCAGTGGG
TCATCGCTCTGTCACATTTCATCCAGCAGCAGGGGGCGCTGCTGCTGGCTGCCGGTGTGCTGGGCGGGCTCGCAGCGCGC
CTGGCCTATCAGCGCTCCCCGAGCTTGCGTGACCGCCTGGATGTCGGCCTTTTGCACATGCCCCTGGCCGGGCCACTGCT
GCATAAATCCGCGGTGGCCCGCTACGCACGGACCCTGGCCACCACCTTCGCCGCCGGCGTTCCCCTGGTGCAGGCCCTGG
ATTCAGTGGCCGGAGCCAGCGGCAACCCTGTCTTCAGGCAAGCGGTGCAACGGATCCGCCAGCAGGTCGCCGCCGGCATG
CAATTGAACTTTGCCATGCGCGCCAGCGGCGTCTTCCCGACCATGGCGATCCAGATGACCGCCATCGGCGAAGAGTCCGG
AACCCTGGATCATCTGCTGGAAAAAGTCGCGATCCACTACGAGGTCGAGGTGGACAACCTGGTGGACAGCCTGACCAGCC
TCATGGAGCCGTTGATCATGGTGGTCCTGGGGGGTATCGTCGGCGCCCTGGTGGTTGCCATGTACCTGCCTATCTTCCAA
CTCGGTACAGCGATCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(72-194)

Type II secretion system (T2SS), protein F (T2SSF)

(276-397)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2C9ETK4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

58.765

100

0.588
  pilC Acinetobacter baylyi ADP1

53.056

100

0.536
  pilC Acinetobacter baumannii D1279779

53.186

100

0.536
  pilC Legionella pneumophila strain ERS1305867

47.059

100

0.474
  pilC Vibrio cholerae strain A1552

43.401

97.284

0.422
  pilG Neisseria gonorrhoeae MS11

42.289

99.259

0.42
  pilG Neisseria meningitidis 44/76-A

42.394

99.012

0.42
  pilC Vibrio campbellii strain DS40M4

41.542

99.259

0.412
  pilC Thermus thermophilus HB27

38

98.765

0.375

Multiple sequence alignment