Detailed information NTG1008662

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ABNP45_RS26980
• Genome accession: NZ_CP157871
• Coordinates: 5939456..5940328 (+)
• Length: 290 a.a.
• NCBI ID: WP_041119927.1
• Uniprot ID: -
• Organism: Pseudomonas protegens strain H407
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5934456..5945328

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABNP45_RS26965 (ABNP45_26930)	-	5936905..5937261 (-)	357	WP_011063519.1	BON domain-containing protein	-
ABNP45_RS26970 (ABNP45_26935)	-	5937490..5937906 (-)	417	WP_041119926.1	pilin	-
ABNP45_RS26975 (ABNP45_26940)	pilC	5938236..5939453 (+)	1218	WP_015637067.1	type II secretion system F family protein	Machinery gene
ABNP45_RS26980 (ABNP45_26945)	pilD	5939456..5940328 (+)	873	WP_041119927.1	A24 family peptidase	Machinery gene
ABNP45_RS26985 (ABNP45_26950)	coaE	5940325..5940948 (+)	624	WP_011063523.1	dephospho-CoA kinase	-
ABNP45_RS26990 (ABNP45_26955)	yacG	5940945..5941148 (+)	204	WP_011063524.1	DNA gyrase inhibitor YacG	-
ABNP45_RS26995 (ABNP45_26960)	-	5941168..5941383 (-)	216	WP_011063525.1	hypothetical protein	-
ABNP45_RS27000 (ABNP45_26965)	-	5941447..5942136 (-)	690	WP_053153931.1	energy-coupling factor ABC transporter permease	-
ABNP45_RS27005 (ABNP45_26970)	-	5942133..5942600 (-)	468	WP_053153934.1	hypothetical protein	-
ABNP45_RS27010 (ABNP45_26975)	-	5942744..5943373 (+)	630	WP_011063528.1	DUF1780 domain-containing protein	-
ABNP45_RS27015 (ABNP45_26980)	-	5943563..5943736 (+)	174	WP_232644495.1	DUF3094 family protein	-
ABNP45_RS27020 (ABNP45_26985)	-	5943797..5945095 (+)	1299	WP_350023242.1	NAD(P)/FAD-dependent oxidoreductase	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32185.36 Da
• Isoelectric Point: 7.2993

>NTDB_id=1008662 ABNP45_RS26980 WP_041119927.1 5939456..5940328(+) (pilD) [Pseudomonas protegens strain H407]
MPLTDALTLYPMAFGAAALVLGLIVGSFLNVLVWRLPKMLERDWRAQARDVLGLEPEPVTAPYNLMLPRSQCPHCAQAIR
PWENIPLLSYLWLRGRCAHCNSSISPRYPLTELACGLISGFIAWHFGFGWAAGLMLILSWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANSFGLLISLEDALWGTVIGYLFLWSVFWLFKLLTGKEGMGHGDFKLLALFGAWGGWQILPLTLLLSSLLG
AILGTILLRLRREKTSTPIPFGPFLAIAGWIALLWGGQITDFYLQFVGFQ

Nucleotide

• Length: 873 bp

>NTDB_id=1008662 ABNP45_RS26980 WP_041119927.1 5939456..5940328(+) (pilD) [Pseudomonas protegens strain H407]
ATGCCCCTGACTGACGCCCTCACTCTCTACCCCATGGCCTTCGGGGCTGCGGCCCTGGTATTGGGCCTGATCGTCGGCAG
CTTTCTCAACGTGCTGGTGTGGCGCCTGCCGAAAATGCTCGAACGCGACTGGCGAGCCCAGGCCCGCGACGTGCTGGGGC
TGGAGCCGGAACCAGTGACTGCGCCCTATAACCTGATGCTGCCGCGCTCCCAGTGCCCGCACTGTGCGCAGGCGATCCGC
CCCTGGGAAAACATTCCGCTGCTCAGTTACCTGTGGCTGCGTGGCCGCTGCGCCCACTGCAATAGCTCCATCAGCCCGCG
CTACCCGTTGACCGAACTGGCTTGCGGACTGATCTCGGGTTTTATCGCCTGGCACTTCGGCTTCGGCTGGGCGGCCGGGC
TGATGCTGATCCTCAGTTGGGGGCTGCTGGCAATGAGCCTGATCGACGCCGATCACCAGTTGCTGCCGGATGTGCTGGTG
CTGCCACTGTTGTGGCTGGGGCTGATCGCCAACAGCTTCGGCCTGCTGATCAGCCTGGAGGATGCGCTGTGGGGGACGGT
GATCGGCTACCTGTTCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGCTGACCGGCAAGGAGGGCATGGGCCACGGTGATT
TCAAGCTGCTGGCCCTGTTCGGGGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCCTGCTGCTGTCATCCCTGTTGGGG
GCGATTCTCGGCACGATCCTGCTGCGCCTGCGCCGGGAAAAGACCTCGACGCCAATCCCCTTTGGACCCTTTCTGGCCAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGACTTCTATCTGCAGTTTGTCGGTTTCCAATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

• Type IV leader peptidase family (Peptidase_A24) (136-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	54.093	96.897	0.524
pilD	Vibrio campbellii strain DS40M4	49.645	97.241	0.483
pilD	Acinetobacter baumannii D1279779	50.365	94.483	0.476
pilD	Acinetobacter nosocomialis M2	50.365	94.483	0.476
pilD	Neisseria gonorrhoeae MS11	47.037	93.103	0.438