Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ABL839_RS23245 Genome accession   NZ_CP157634
Coordinates   4995844..4997073 (+) Length   409 a.a.
NCBI ID   WP_019656540.1    Uniprot ID   -
Organism   Variovorax paradoxus strain 110B     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4990844..5002073
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABL839_RS23215 (ABL839_23240) cgtA 4990910..4991986 (-) 1077 WP_019656545.1 Obg family GTPase CgtA -
  ABL839_RS23220 (ABL839_23245) rpmA 4992058..4992318 (-) 261 WP_019656544.1 50S ribosomal protein L27 -
  ABL839_RS23225 (ABL839_23250) rplU 4992340..4992651 (-) 312 WP_019656543.1 50S ribosomal protein L21 -
  ABL839_RS23230 (ABL839_23255) - 4992847..4993839 (+) 993 WP_019656542.1 polyprenyl synthetase family protein -
  ABL839_RS23240 (ABL839_23265) pilB 4994084..4995817 (+) 1734 WP_019656541.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ABL839_RS23245 (ABL839_23270) pilC 4995844..4997073 (+) 1230 WP_019656540.1 type II secretion system F family protein Machinery gene
  ABL839_RS23250 (ABL839_23275) - 4997073..4998038 (+) 966 WP_019656539.1 prepilin peptidase -
  ABL839_RS23255 (ABL839_23280) coaE 4998046..4998657 (+) 612 WP_019656538.1 dephospho-CoA kinase -
  ABL839_RS23260 (ABL839_23285) - 4998727..5000220 (+) 1494 WP_019656537.1 MBOAT family O-acyltransferase -
  ABL839_RS23265 (ABL839_23290) - 5000382..5001416 (+) 1035 WP_019656536.1 hypothetical protein -

Sequence

Protein


Download         Length: 409 a.a.        Molecular weight: 44731.40 Da        Isoelectric Point: 9.5102

>NTDB_id=1007894 ABL839_RS23245 WP_019656540.1 4995844..4997073(+) (pilC) [Variovorax paradoxus strain 110B]
MATVASSRTQPTHKEYVFEWEGKDRNGKLVRGELRAAGENQVQAALRRQGVLASKIKKRRMRSGKAIKPKDIAIFTRQLA
TMMKAGVPLMQSFDIVGRGNANPSVAKLLNDIRSDVETGSSLSSAFRKFPKYFDNLYCNLVEAGEAAGILEELLDRLATY
MEKTEAIKSKIKSALMYPISVIVVAFIVIAIIMIFVIPAFKEVFTSFGADLPAPTLIVIGISEFFVSYWWLIFGGIGGGL
YFFMQAWKRNERVQRTMDRLLLRIPVFGVLIEKSCVARWTRTLATMFAAGVPLVEALDSVGGASGNTVYGDATAKIQQEV
STGTSLTAAMTNANLFPSMVIQMTAIGEESGSIDHMLGKAADFYESEVDDMVAGLSSLMEPIIIVFLGTIIGGIVVSMYL
PIFKLGQVV

Nucleotide


Download         Length: 1230 bp        

>NTDB_id=1007894 ABL839_RS23245 WP_019656540.1 4995844..4997073(+) (pilC) [Variovorax paradoxus strain 110B]
ATGGCTACAGTTGCATCCTCCCGCACCCAGCCCACCCACAAGGAATATGTCTTCGAGTGGGAAGGCAAGGACCGCAACGG
CAAGCTGGTACGCGGCGAACTTCGTGCGGCTGGCGAGAACCAGGTGCAGGCCGCGCTGCGCCGCCAGGGCGTGCTCGCCT
CCAAGATCAAGAAGCGCCGCATGCGCTCGGGCAAGGCGATCAAGCCGAAGGACATCGCGATCTTCACGCGCCAGCTGGCC
ACGATGATGAAGGCGGGCGTGCCGCTGATGCAGTCCTTCGATATCGTGGGACGCGGTAATGCGAATCCAAGCGTAGCCAA
GCTGCTCAATGACATTCGCAGCGACGTGGAAACTGGTAGCTCGCTGTCCTCCGCATTCCGCAAGTTCCCGAAGTACTTCG
ACAACCTGTATTGCAACCTGGTGGAGGCTGGCGAAGCGGCCGGTATTCTGGAAGAACTGCTGGACCGGCTGGCCACCTAC
ATGGAGAAGACCGAGGCGATCAAGTCGAAGATCAAGTCGGCGCTGATGTATCCGATCTCGGTGATCGTGGTGGCATTCAT
CGTGATCGCCATCATCATGATCTTCGTGATCCCCGCGTTCAAGGAGGTGTTCACGTCTTTTGGCGCCGACCTGCCTGCGC
CAACACTGATCGTGATCGGTATCAGCGAGTTCTTCGTTTCCTATTGGTGGCTTATTTTCGGCGGCATCGGTGGGGGGCTC
TACTTCTTCATGCAGGCCTGGAAACGCAACGAGCGCGTCCAAAGAACGATGGACCGCCTGCTGCTGAGGATCCCTGTCTT
CGGCGTCCTCATCGAAAAATCCTGCGTCGCCCGCTGGACCCGCACCCTCGCCACCATGTTCGCCGCCGGCGTCCCGCTGG
TCGAAGCGCTCGACTCCGTGGGCGGCGCTTCGGGCAACACCGTCTACGGCGACGCCACGGCGAAGATCCAGCAGGAGGTG
TCCACCGGCACCAGCCTCACGGCAGCCATGACCAACGCCAACCTGTTCCCGTCCATGGTGATCCAGATGACCGCCATCGG
CGAGGAATCCGGCTCCATCGACCACATGCTCGGCAAGGCCGCCGACTTCTATGAATCCGAGGTGGACGACATGGTCGCCG
GTCTCTCCAGCCTGATGGAGCCGATCATCATCGTCTTCCTCGGCACGATCATCGGCGGCATCGTGGTGTCCATGTACCTG
CCCATCTTCAAGCTCGGCCAGGTCGTTTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(279-401)

Type II secretion system (T2SS), protein F (T2SSF)

(75-198)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

54.839

98.533

0.54
  pilG Neisseria gonorrhoeae MS11

52.645

97.066

0.511
  pilG Neisseria meningitidis 44/76-A

52.393

97.066

0.509
  pilC Acinetobacter baylyi ADP1

51.256

97.311

0.499
  pilC Acinetobacter baumannii D1279779

48.662

100

0.489
  pilC Legionella pneumophila strain ERS1305867

50.505

96.822

0.489
  pilC Vibrio cholerae strain A1552

40.452

97.311

0.394
  pilC Vibrio campbellii strain DS40M4

38.575

99.511

0.384
  pilC Thermus thermophilus HB27

37.47

100

0.384

Multiple sequence alignment