Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ABL838_RS25105 Genome accession   NZ_CP157624
Coordinates   5485446..5486675 (+) Length   409 a.a.
NCBI ID   WP_418122408.1    Uniprot ID   -
Organism   Variovorax sp. 160MFSha2.1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5480446..5491675
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABL838_RS25075 (ABL838_25040) cgtA 5480519..5481595 (-) 1077 WP_184642159.1 Obg family GTPase CgtA -
  ABL838_RS25080 (ABL838_25045) rpmA 5481668..5481928 (-) 261 WP_093057448.1 50S ribosomal protein L27 -
  ABL838_RS25085 (ABL838_25050) rplU 5481941..5482252 (-) 312 WP_057592097.1 50S ribosomal protein L21 -
  ABL838_RS25090 (ABL838_25055) - 5482449..5483441 (+) 993 WP_418122407.1 polyprenyl synthetase family protein -
  ABL838_RS25100 (ABL838_25065) pilB 5483686..5485419 (+) 1734 WP_126024679.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ABL838_RS25105 (ABL838_25070) pilC 5485446..5486675 (+) 1230 WP_418122408.1 type II secretion system F family protein Machinery gene
  ABL838_RS25110 (ABL838_25075) - 5486675..5487640 (+) 966 WP_184642162.1 prepilin peptidase -
  ABL838_RS25115 (ABL838_25080) coaE 5487648..5488259 (+) 612 WP_418122410.1 dephospho-CoA kinase -
  ABL838_RS25120 (ABL838_25085) - 5488329..5489822 (+) 1494 WP_126024676.1 MBOAT family O-acyltransferase -
  ABL838_RS25125 (ABL838_25090) - 5489827..5490861 (+) 1035 WP_418122411.1 hypothetical protein -
  ABL838_RS25130 (ABL838_25095) zapD 5490892..5491647 (+) 756 WP_126024674.1 cell division protein ZapD -

Sequence

Protein


Download         Length: 409 a.a.        Molecular weight: 44641.30 Da        Isoelectric Point: 9.6798

>NTDB_id=1007802 ABL838_RS25105 WP_418122408.1 5485446..5486675(+) (pilC) [Variovorax sp. 160MFSha2.1]
MATVASSRTQPTHKEFVFEWEGKDRNGKLVRGELRAAGENQVQAALRRQGVLASKIKKRRMRSGKAIKPKDIAIFTRQLA
TMMKAGVPLMQSFDIVGRGNANPSVAKLLNDIRSDVETGSSLSSAFRKFPKYFDNLYCNLVEAGEAAGILEELLDRLATY
MEKTEAIKSKIKSALMYPISVIVVAFVVIAIIMIFVIPAFKSVFTSFGADLPAPTLIVIGISEFFVSYWWLIFGGIGGGL
YFFLQAWKRNERVQRTMDRLLLRIPVFGALIEKSCVARWTRTLATMFAAGVPLVEALDSVGGASGNTVYGDATAKIQQEV
STGTSLTAAMTNVNLFPSMVIQMTAIGEESGSIDHMLGKAADFYESEVDDMVAGLSSLMEPIIIVFLGTIIGGIVVSMYL
PIFKLGQVV

Nucleotide


Download         Length: 1230 bp        

>NTDB_id=1007802 ABL838_RS25105 WP_418122408.1 5485446..5486675(+) (pilC) [Variovorax sp. 160MFSha2.1]
ATGGCTACAGTGGCATCCTCCCGCACCCAGCCCACACACAAGGAATTTGTCTTCGAATGGGAAGGCAAGGACCGCAACGG
CAAGCTGGTACGCGGCGAACTTCGTGCTGCCGGCGAAAACCAGGTGCAGGCCGCGCTGCGCCGCCAGGGCGTGCTCGCCT
CCAAGATCAAGAAGCGCCGCATGCGCTCAGGCAAGGCGATCAAGCCGAAGGACATCGCGATCTTCACGCGCCAGCTGGCG
ACCATGATGAAGGCCGGCGTGCCCCTGATGCAGTCCTTCGATATCGTCGGGCGCGGCAATGCGAACCCGAGTGTGGCCAA
GCTGCTCAACGACATCCGCAGCGACGTGGAAACCGGCAGTTCGCTCTCGTCCGCCTTCCGCAAGTTTCCGAAGTACTTCG
ACAATCTCTATTGCAACTTGGTGGAGGCAGGCGAAGCGGCCGGTATTCTCGAAGAGTTGCTGGACCGGCTGGCGACCTAC
ATGGAAAAGACCGAGGCGATCAAATCCAAGATCAAGTCGGCCTTGATGTATCCGATCTCAGTGATTGTTGTGGCCTTCGT
GGTGATCGCCATCATCATGATCTTCGTGATCCCGGCATTCAAATCGGTGTTCACGTCGTTCGGAGCCGACCTGCCGGCAC
CGACCCTGATCGTGATCGGCATCAGCGAGTTCTTCGTGTCTTACTGGTGGCTGATCTTCGGCGGCATTGGCGGCGGGCTC
TATTTCTTCCTGCAGGCCTGGAAGCGCAATGAGCGCGTGCAAAGGACCATGGACCGCCTTCTGCTGAGAATTCCGGTTTT
CGGCGCGCTGATCGAAAAATCCTGCGTCGCCCGCTGGACCCGCACTCTGGCCACCATGTTCGCCGCCGGCGTCCCGCTGG
TCGAAGCCCTCGACTCCGTGGGCGGCGCCTCCGGCAACACCGTCTACGGCGACGCCACCGCGAAGATCCAGCAGGAAGTC
TCCACCGGCACCAGCCTCACGGCGGCCATGACCAACGTCAACCTGTTCCCGTCCATGGTGATCCAGATGACCGCCATCGG
CGAGGAATCCGGCTCGATCGACCACATGCTGGGCAAGGCCGCCGACTTCTACGAATCCGAGGTGGACGACATGGTCGCGG
GCCTCTCCAGCCTGATGGAGCCGATCATCATCGTGTTCCTCGGCACCATCATCGGCGGCATCGTGGTGTCGATGTACCTG
CCCATCTTCAAGCTCGGCCAGGTCGTTTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(279-401)

Type II secretion system (T2SS), protein F (T2SSF)

(75-198)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

54.591

98.533

0.538
  pilG Neisseria gonorrhoeae MS11

52.393

97.066

0.509
  pilG Neisseria meningitidis 44/76-A

52.141

97.066

0.506
  pilC Acinetobacter baylyi ADP1

51.759

97.311

0.504
  pilC Acinetobacter baumannii D1279779

49.148

100

0.494
  pilC Legionella pneumophila strain ERS1305867

50.758

96.822

0.491
  pilC Vibrio cholerae strain A1552

40.955

97.311

0.399
  pilC Thermus thermophilus HB27

37.47

100

0.384
  pilC Vibrio campbellii strain DS40M4

38.75

97.8

0.379

Multiple sequence alignment