Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilB   Type   Machinery gene
Locus tag   ABL838_RS25100 Genome accession   NZ_CP157624
Coordinates   5483686..5485419 (+) Length   577 a.a.
NCBI ID   WP_126024679.1    Uniprot ID   -
Organism   Variovorax sp. 160MFSha2.1     
Function   power the assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5478686..5490419
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABL838_RS25070 (ABL838_25035) proB 5479287..5480429 (-) 1143 WP_126024682.1 glutamate 5-kinase -
  ABL838_RS25075 (ABL838_25040) cgtA 5480519..5481595 (-) 1077 WP_184642159.1 Obg family GTPase CgtA -
  ABL838_RS25080 (ABL838_25045) rpmA 5481668..5481928 (-) 261 WP_093057448.1 50S ribosomal protein L27 -
  ABL838_RS25085 (ABL838_25050) rplU 5481941..5482252 (-) 312 WP_057592097.1 50S ribosomal protein L21 -
  ABL838_RS25090 (ABL838_25055) - 5482449..5483441 (+) 993 WP_418122407.1 polyprenyl synthetase family protein -
  ABL838_RS25100 (ABL838_25065) pilB 5483686..5485419 (+) 1734 WP_126024679.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ABL838_RS25105 (ABL838_25070) pilC 5485446..5486675 (+) 1230 WP_418122408.1 type II secretion system F family protein Machinery gene
  ABL838_RS25110 (ABL838_25075) - 5486675..5487640 (+) 966 WP_184642162.1 prepilin peptidase -
  ABL838_RS25115 (ABL838_25080) coaE 5487648..5488259 (+) 612 WP_418122410.1 dephospho-CoA kinase -
  ABL838_RS25120 (ABL838_25085) - 5488329..5489822 (+) 1494 WP_126024676.1 MBOAT family O-acyltransferase -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62511.70 Da        Isoelectric Point: 5.4476

>NTDB_id=1007801 ABL838_RS25100 WP_126024679.1 5483686..5485419(+) (pilB) [Variovorax sp. 160MFSha2.1]
MAAAELPVKEPSQIALPGLARALVSAGKLPARAAEDIYQKSISARTSFIAELTGSGAVSAADLAHTLSTAFGAPLLDLDA
IDPQRLPKDLLDQKLCHAYRIVVLSKRNNRLIVATADPSDQQAAEKIKFASQMGVDWVIAEYDKLSRMIEAAAVSAAETI
NSIVGSEFEFDDVAAETANEGNDQAIAEVEDAPVVRFLHKMLLDAVSMRASDIHFEPYEHNYRVRFRVDGELREVASPPT
VIKDKLASRIKVISRLDISEKRVPQDGRMKLKIGPDRVIDFRVSTLPTLFGEKIVVRILDPSSARLGIDALGYDADEKAR
LLHAIGRPYGMVLVTGPTGSGKTVSLYTCLNLLNQPGVNIATAEDPSEINLPGVNQVNVNERAGLTFAAALRAFLRQDPD
IIMVGEIRDLETADISIKAAQTGHLVLSTLHTNDAPTTLTRMRNMGIAPFNIASSVILITAQRLARRLCTVCKLPADIPR
ETLLEAGFKEEELDGSWKPYRPVGCSACSSGYKGRVGIYQVMPISEAIQEIILRDGSALDIAAQSEAEGVRSLRQSGLRK
VMQGLTSLEEVVACTNE

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=1007801 ABL838_RS25100 WP_126024679.1 5483686..5485419(+) (pilB) [Variovorax sp. 160MFSha2.1]
ATGGCTGCAGCCGAACTTCCTGTTAAAGAACCTTCGCAAATTGCCCTACCCGGGCTTGCGCGCGCCCTGGTTTCGGCCGG
CAAGCTGCCTGCCAGGGCAGCCGAGGACATCTATCAGAAGTCCATCAGCGCTCGCACGAGCTTCATTGCCGAACTGACCG
GCTCCGGCGCCGTTTCCGCCGCAGACCTCGCCCACACCCTTTCCACCGCGTTCGGCGCACCGCTGCTCGATCTCGACGCC
ATCGATCCCCAGCGCCTGCCCAAGGACCTGCTCGACCAGAAGCTGTGCCATGCGTACCGCATCGTCGTGCTCAGCAAGCG
CAACAACCGTCTGATTGTTGCAACAGCCGATCCTTCCGATCAGCAGGCCGCGGAAAAGATCAAGTTCGCCTCCCAGATGG
GCGTCGACTGGGTCATCGCCGAATACGACAAGCTGTCGCGGATGATCGAAGCCGCCGCCGTCAGCGCGGCCGAGACCATC
AACAGCATCGTCGGCAGCGAGTTCGAGTTCGACGACGTCGCGGCCGAGACCGCGAACGAGGGCAATGACCAGGCCATCGC
CGAAGTCGAAGATGCGCCGGTCGTGCGCTTCCTGCACAAGATGCTGCTCGACGCCGTCAGCATGCGGGCATCCGACATCC
ACTTCGAGCCCTACGAGCACAACTACCGCGTCCGCTTCCGGGTCGACGGCGAACTGCGCGAAGTTGCCAGCCCGCCCACG
GTCATCAAGGACAAGCTGGCCTCGCGCATCAAGGTCATTTCCCGGCTCGACATCTCCGAGAAGCGCGTGCCGCAGGACGG
CCGCATGAAGCTCAAGATCGGTCCCGACCGCGTGATCGACTTCCGCGTGAGCACGCTGCCCACGCTCTTCGGCGAGAAGA
TCGTCGTGCGTATCCTCGACCCGAGCAGCGCGCGCCTGGGCATCGACGCCCTGGGTTACGACGCTGACGAAAAGGCGCGG
CTGCTGCATGCCATCGGCCGCCCGTACGGGATGGTGCTCGTCACCGGCCCTACCGGCTCGGGCAAGACGGTGTCGCTCTA
CACCTGCCTGAACCTCCTGAACCAGCCGGGCGTGAACATCGCGACGGCGGAAGACCCGTCGGAAATCAACCTGCCCGGCG
TCAACCAGGTCAATGTCAACGAACGCGCGGGCCTGACCTTCGCAGCCGCGCTGCGCGCCTTCCTGCGCCAGGATCCCGAC
ATCATCATGGTCGGCGAAATCCGCGACCTCGAAACCGCCGACATCTCGATCAAGGCAGCCCAGACCGGCCACCTGGTGCT
CTCCACGCTGCACACCAACGATGCGCCGACCACGCTCACGCGGATGCGCAACATGGGCATCGCGCCGTTCAACATCGCGT
CGAGCGTGATCCTGATCACTGCCCAGCGCCTCGCGCGGCGCCTGTGCACCGTCTGCAAGCTGCCGGCCGACATCCCGCGC
GAAACGCTGCTCGAGGCAGGTTTCAAGGAAGAAGAGCTGGACGGCTCCTGGAAACCGTACCGCCCCGTCGGCTGCTCCGC
CTGCAGCAGCGGCTACAAGGGCCGCGTGGGCATCTACCAGGTGATGCCGATCTCGGAAGCCATCCAGGAAATCATCCTGC
GCGACGGCAGTGCGCTCGACATCGCCGCGCAGTCGGAAGCCGAGGGCGTGCGTTCGCTGCGCCAGTCGGGCCTGCGCAAG
GTCATGCAGGGCCTCACTTCGCTCGAAGAAGTGGTGGCCTGCACCAACGAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein E, N-terminal domain (MshEN)

(54-153)

Type II/IV secretion system protein (T2SSE)

(200-467)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilB Acinetobacter baumannii D1279779

55.516

97.4

0.541
  pilB Acinetobacter baylyi ADP1

54.545

97.227

0.53
  pilF Neisseria gonorrhoeae MS11

52.931

97.574

0.516
  pilB Legionella pneumophila strain ERS1305867

49.107

97.054

0.477
  pilB Vibrio campbellii strain DS40M4

45.633

97.227

0.444
  pilB Vibrio parahaemolyticus RIMD 2210633

45.422

96.534

0.438
  pilB Vibrio cholerae strain A1552

47.876

89.775

0.43
  pilF Thermus thermophilus HB27

38.529

98.96

0.381
  pilB Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

40.037

93.068

0.373

Multiple sequence alignment