Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   ABKJ27_RS02630 Genome accession   NZ_CP157578
Coordinates   577686..578156 (+) Length   156 a.a.
NCBI ID   WP_000609602.1    Uniprot ID   A0A081QZK0
Organism   Streptococcus sp. KHUD_011     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 572686..583156
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABKJ27_RS02625 (ABKJ27_02635) rpsF 577384..577674 (+) 291 WP_001151780.1 30S ribosomal protein S6 -
  ABKJ27_RS02630 (ABKJ27_02640) ssbA 577686..578156 (+) 471 WP_000609602.1 single-stranded DNA-binding protein SsbA Machinery gene
  ABKJ27_RS02635 (ABKJ27_02645) rpsR 578188..578427 (+) 240 WP_000068664.1 30S ribosomal protein S18 -
  ABKJ27_RS02640 (ABKJ27_02650) - 578600..579103 (+) 504 WP_410011977.1 GNAT family N-acetyltransferase -
  ABKJ27_RS02645 (ABKJ27_02655) - 579183..580583 (+) 1401 WP_410011978.1 bifunctional Cof-type HAD-IIB family hydrolase/peptidylprolyl isomerase -
  ABKJ27_RS02650 (ABKJ27_02660) - 580585..580947 (+) 363 WP_153226010.1 S1 RNA-binding domain-containing protein -
  ABKJ27_RS02655 (ABKJ27_02665) - 581000..581749 (+) 750 WP_410011979.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  ABKJ27_RS02660 (ABKJ27_02670) - 581739..582023 (+) 285 WP_410011980.1 GIY-YIG nuclease family protein -
  ABKJ27_RS02665 (ABKJ27_02675) - 582215..583150 (+) 936 WP_153226007.1 manganese-dependent inorganic pyrophosphatase -

Sequence

Protein


Download         Length: 156 a.a.        Molecular weight: 17354.17 Da        Isoelectric Point: 4.9164

>NTDB_id=1007449 ABKJ27_RS02630 WP_000609602.1 577686..578156(+) (ssbA) [Streptococcus sp. KHUD_011]
MINNVVLVGRMTRDAELRYTPSNVAVATFTLAVNRTFKSQNGEREADFINVVMWRQQAENLANWAKKGSLIGVTGRIQTR
SYDNQQGQRVYVTEVVAENFQMLESRSVREGHTGGAYSAPSSNYSAPTNSVPDFSRDENPFGATNPLDISDDDLPF

Nucleotide


Download         Length: 471 bp        

>NTDB_id=1007449 ABKJ27_RS02630 WP_000609602.1 577686..578156(+) (ssbA) [Streptococcus sp. KHUD_011]
ATGATTAACAATGTTGTACTTGTAGGGCGTATGACACGTGACGCTGAGTTGCGTTATACCCCATCAAATGTAGCAGTTGC
GACTTTTACTCTTGCAGTAAACCGTACATTTAAGAGTCAAAATGGTGAACGTGAGGCTGATTTTATCAATGTCGTTATGT
GGCGCCAACAGGCTGAAAACCTTGCTAACTGGGCTAAAAAAGGCTCACTTATCGGGGTGACAGGTCGTATCCAGACTCGT
AGTTACGATAACCAGCAAGGACAACGTGTATACGTGACAGAGGTCGTGGCTGAGAATTTCCAAATGTTGGAAAGCCGTAG
TGTGCGTGAGGGTCACACAGGTGGAGCTTATTCTGCACCAAGTTCAAACTATTCAGCGCCTACAAATTCAGTACCAGACT
TTTCACGTGATGAAAATCCATTTGGAGCAACAAATCCTTTGGATATTTCAGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A081QZK0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

55.233

100

0.609
  ssb Latilactobacillus sakei subsp. sakei 23K

54.706

100

0.596
  ssbB/cilA Streptococcus pneumoniae TIGR4

51.282

75

0.385
  ssbB Bacillus subtilis subsp. subtilis str. 168

55.66

67.949

0.378
  ssbB/cilA Streptococcus pneumoniae R6

50.427

75

0.378
  ssbB/cilA Streptococcus mitis SK321

50.427

75

0.378
  ssbB/cilA Streptococcus mitis NCTC 12261

50.427

75

0.378
  ssbB/cilA Streptococcus pneumoniae Rx1

50.427

75

0.378
  ssbB/cilA Streptococcus pneumoniae D39

50.427

75

0.378
  ssbB Streptococcus sobrinus strain NIDR 6715-7

54.128

69.872

0.378

Multiple sequence alignment