Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ABLU28_RS06645 Genome accession   NZ_CP157495
Coordinates   1293717..1294157 (+) Length   146 a.a.
NCBI ID   WP_406834601.1    Uniprot ID   -
Organism   Lactococcus lactis strain 2B-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1284654..1315741 1293717..1294157 within 0
IS/Tn 1292797..1293522 1293717..1294157 flank 195


Gene organization within MGE regions


Location: 1284654..1315741
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABLU28_RS06555 (ABLU28_06550) - 1284654..1285226 (+) 573 WP_406834617.1 hypothetical protein -
  ABLU28_RS06560 (ABLU28_06555) - 1285318..1285611 (+) 294 WP_406834616.1 hypothetical protein -
  ABLU28_RS06565 (ABLU28_06560) - 1285608..1285997 (+) 390 WP_406834615.1 hypothetical protein -
  ABLU28_RS06570 (ABLU28_06565) - 1286299..1286949 (+) 651 WP_406834614.1 DUF1642 domain-containing protein -
  ABLU28_RS06575 (ABLU28_06570) - 1287050..1287424 (+) 375 WP_406834613.1 DUF3850 domain-containing protein -
  ABLU28_RS06580 (ABLU28_06575) - 1287421..1287912 (+) 492 WP_406834612.1 hypothetical protein -
  ABLU28_RS06585 (ABLU28_06580) - 1287909..1288169 (+) 261 WP_311843514.1 hypothetical protein -
  ABLU28_RS06590 (ABLU28_06585) - 1288343..1288498 (+) 156 WP_406834611.1 hypothetical protein -
  ABLU28_RS06595 (ABLU28_06590) - 1288500..1288823 (+) 324 WP_406834610.1 hypothetical protein -
  ABLU28_RS06600 (ABLU28_06595) - 1288816..1289130 (+) 315 WP_406834609.1 hypothetical protein -
  ABLU28_RS06605 (ABLU28_06600) - 1289142..1289510 (+) 369 WP_406834608.1 hypothetical protein -
  ABLU28_RS06610 (ABLU28_06605) - 1289553..1289801 (+) 249 WP_406834607.1 hypothetical protein -
  ABLU28_RS06615 (ABLU28_06610) - 1289803..1290321 (+) 519 WP_406834606.1 hypothetical protein -
  ABLU28_RS06620 (ABLU28_06615) - 1290322..1290603 (+) 282 WP_406834605.1 hypothetical protein -
  ABLU28_RS06625 (ABLU28_06620) - 1290596..1291132 (+) 537 WP_406834604.1 hypothetical protein -
  ABLU28_RS06630 (ABLU28_06625) - 1291207..1291851 (+) 645 WP_406834603.1 N-6 DNA methylase -
  ABLU28_RS06635 (ABLU28_06630) - 1291868..1292059 (+) 192 WP_311843499.1 hypothetical protein -
  ABLU28_RS06640 (ABLU28_06635) - 1292135..1293522 (+) 1388 WP_406834602.1 IS3 family transposase -
  ABLU28_RS06645 (ABLU28_06640) ssb 1293717..1294157 (+) 441 WP_406834601.1 single-stranded DNA-binding protein Machinery gene
  ABLU28_RS06650 (ABLU28_06645) - 1294178..1295644 (+) 1467 Protein_1261 Y-family DNA polymerase -
  ABLU28_RS06655 (ABLU28_06650) - 1295641..1296024 (+) 384 WP_406834599.1 hypothetical protein -
  ABLU28_RS06660 (ABLU28_06655) recA 1296039..1297061 (+) 1023 WP_406834598.1 recombinase RecA -
  ABLU28_RS06665 (ABLU28_06660) - 1297178..1297840 (+) 663 WP_406834597.1 DUF6287 domain-containing protein -
  ABLU28_RS06670 (ABLU28_06665) - 1298150..1298890 (+) 741 WP_025016941.1 demethylmenaquinone methyltransferase -
  ABLU28_RS06675 (ABLU28_06670) - 1298926..1299759 (+) 834 WP_406834596.1 XRE/MutR family transcriptional regulator -
  ABLU28_RS06680 (ABLU28_06675) - 1299889..1300203 (+) 315 WP_058206280.1 bacteriocin immunity protein -
  ABLU28_RS06685 (ABLU28_06680) - 1300285..1300554 (+) 270 WP_064973999.1 hypothetical protein -
  ABLU28_RS06690 (ABLU28_06685) - 1300576..1300809 (+) 234 WP_058203854.1 hypothetical protein -
  ABLU28_RS06695 (ABLU28_06690) - 1300978..1302516 (+) 1539 WP_003130350.1 ClC family H(+)/Cl(-) exchange transporter -
  ABLU28_RS06700 (ABLU28_06695) menA 1302541..1303500 (-) 960 WP_003130349.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -
  ABLU28_RS06705 (ABLU28_06700) - 1304158..1304757 (+) 600 WP_003130347.1 transglycosylase -
  ABLU28_RS06715 (ABLU28_06710) - 1305024..1306004 (-) 981 WP_010906082.1 Gfo/Idh/MocA family protein -
  ABLU28_RS06720 (ABLU28_06715) udk 1306302..1306922 (+) 621 WP_010906081.1 uridine kinase -
  ABLU28_RS06725 (ABLU28_06720) pta 1307139..1308119 (+) 981 WP_003130342.1 phosphate acetyltransferase -
  ABLU28_RS06730 (ABLU28_06725) - 1308254..1308646 (+) 393 WP_015426846.1 hypothetical protein -
  ABLU28_RS06735 (ABLU28_06730) - 1308691..1309476 (-) 786 WP_003129459.1 Cof-type HAD-IIB family hydrolase -
  ABLU28_RS06740 (ABLU28_06735) - 1309638..1311929 (+) 2292 WP_003129457.1 DNA translocase FtsK -
  ABLU28_RS06745 - 1311926..1312261 (+) 336 WP_406840785.1 hypothetical protein -
  ABLU28_RS06750 - 1312281..1312502 (+) 222 WP_406840787.1 hypothetical protein -
  ABLU28_RS06755 (ABLU28_06745) holA 1312509..1313513 (+) 1005 WP_058213047.1 DNA polymerase III subunit delta -
  ABLU28_RS06760 (ABLU28_06750) gpsB 1313567..1313953 (+) 387 WP_003129453.1 cell division regulator GpsB -
  ABLU28_RS06770 (ABLU28_06760) - 1314587..1315741 (+) 1155 WP_003129451.1 class I SAM-dependent RNA methyltransferase -

Sequence

Protein


Download         Length: 146 a.a.        Molecular weight: 16500.47 Da        Isoelectric Point: 4.9119

>NTDB_id=1007198 ABLU28_RS06645 WP_406834601.1 1293717..1294157(+) (ssb) [Lactococcus lactis strain 2B-1]
MINNVVLVGRVTKDVELKYTPQNLAVATFSLAVNRQFKNANGERQADFINCVIWRQQAENLANWAKQGTLIGITGRIQIR
NYENQQGQRVYVTEVVADSFQMLESRNQEEKPIQSKSGAGGTQDMSYPNPFESGKEMNINDDDLPF

Nucleotide


Download         Length: 441 bp        

>NTDB_id=1007198 ABLU28_RS06645 WP_406834601.1 1293717..1294157(+) (ssb) [Lactococcus lactis strain 2B-1]
ATGATAAATAATGTTGTACTCGTTGGGCGCGTGACGAAAGATGTTGAATTAAAATATACTCCGCAAAATCTAGCTGTAGC
AACTTTCTCATTGGCAGTAAATCGTCAATTTAAAAATGCAAATGGAGAACGACAAGCTGATTTTATAAATTGCGTAATCT
GGCGTCAACAAGCTGAGAATTTAGCAAATTGGGCTAAACAAGGGACTTTGATTGGAATTACTGGAAGAATTCAAATCCGT
AACTATGAGAACCAACAAGGTCAACGAGTTTACGTTACAGAAGTAGTTGCCGATAGCTTTCAAATGTTAGAAAGTAGAAA
TCAAGAAGAGAAACCGATTCAGTCGAAATCGGGTGCAGGTGGCACTCAAGATATGAGTTATCCTAATCCATTTGAAAGTG
GAAAAGAAATGAATATCAATGACGATGATTTGCCATTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

51.724

100

0.616
  ssbA Bacillus subtilis subsp. subtilis str. 168

51.744

100

0.61
  ssbB Streptococcus sobrinus strain NIDR 6715-7

41.781

100

0.418
  ssbB/cilA Streptococcus pneumoniae TIGR4

40.411

100

0.404
  ssbB/cilA Streptococcus pneumoniae R6

39.726

100

0.397
  ssbB/cilA Streptococcus mitis SK321

39.726

100

0.397
  ssbB/cilA Streptococcus mitis NCTC 12261

39.726

100

0.397
  ssbB/cilA Streptococcus pneumoniae Rx1

39.726

100

0.397
  ssbB/cilA Streptococcus pneumoniae D39

39.726

100

0.397
  ssbB Bacillus subtilis subsp. subtilis str. 168

52.727

75.342

0.397

Multiple sequence alignment