Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   ABLB95_RS13185 Genome accession   NZ_CP157451
Coordinates   2797289..2799469 (-) Length   726 a.a.
NCBI ID   WP_348908901.1    Uniprot ID   -
Organism   Acinetobacter radioresistens strain XH1688     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2792289..2804469
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABLB95_RS13170 (ABLB95_13160) - 2794726..2795589 (-) 864 WP_005024218.1 hypothetical protein -
  ABLB95_RS13175 (ABLB95_13165) aroB 2795597..2796682 (-) 1086 WP_005404624.1 3-dehydroquinate synthase -
  ABLB95_RS13180 (ABLB95_13170) aroK 2796701..2797252 (-) 552 WP_005018052.1 shikimate kinase AroK -
  ABLB95_RS13185 (ABLB95_13175) pilQ 2797289..2799469 (-) 2181 WP_348908901.1 type IV pilus secretin PilQ family protein Machinery gene
  ABLB95_RS13190 (ABLB95_13180) pilP 2799487..2800014 (-) 528 WP_005018049.1 pilus assembly protein PilP Machinery gene
  ABLB95_RS13195 (ABLB95_13185) comO 2800011..2800721 (-) 711 WP_005404626.1 type 4a pilus biogenesis protein PilO Machinery gene
  ABLB95_RS13200 (ABLB95_13190) pilN 2800718..2801377 (-) 660 WP_138000910.1 PilN domain-containing protein Machinery gene
  ABLB95_RS13205 (ABLB95_13195) comM 2801377..2802435 (-) 1059 WP_005024205.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 726 a.a.        Molecular weight: 78727.37 Da        Isoelectric Point: 5.4971

>NTDB_id=1006991 ABLB95_RS13185 WP_348908901.1 2797289..2799469(-) (pilQ) [Acinetobacter radioresistens strain XH1688]
MKKSFQEFLMGDGNSMIHLYRQFAMGAVAAAMMQVASAAVNITNIVPMQIPGQGTEIRVMFNGLPPQPQAYQLEQPSRLI
LDFDQAKQNLKQPSIPVATNEASAIHVASDEQRSRIIVSLKDAGAFTTRVEGNTFILKINPVTGAPTVLPQPVAVAQQPA
QGISNIGFQRGSQGEGQVLIDFLNPNTPADVQQQGSKVIVRMLGNKIPSHLIRRLNMNDFATPVSTVDAYNEGGNGIITI
QSTGSYEYMAYQTENRLTVSLKRPEEKSTVKTRSAPNYSGKKVSLDFQDIEVRRVLQLLADFTGINLVAADSVQGNITLR
LKDVPWDQALDIILKTKNLDKRRNGDVIWIAPVAELIKAEEEEAKAIAQSTRLMPLQTEYIQLNYAKAVDIEKLITQGRN
SGNGSANGASNNTEALGDSVGSLLSPRGTISIDPRTNTLIINDTAQKLDQIRRMIDLLDVAVKQVMVEARIVRASTDFTK
EMGVKWGILSQGITRNNSLLVGGSETTLWNLRDPDDEGKYTIERPQNLNVDLGVTASGASRIAFGLISLSDFMLDLELSA
LQADGYGEVISTPKVLTADKQQARVASGTQIPYQSSEGGGANAVSTTEFVDATLSLNVTPSITPDGKIQMLLNITSDTPG
NPTPTGQIAINKNEINTNVLVNNGETVVLGGIFEQETRNTQTKVPVLGDLPGVGRLFRRDAKSDNKRELLIFVTPRIVND
SATGNH

Nucleotide


Download         Length: 2181 bp        

>NTDB_id=1006991 ABLB95_RS13185 WP_348908901.1 2797289..2799469(-) (pilQ) [Acinetobacter radioresistens strain XH1688]
ATGAAAAAGAGTTTTCAAGAATTTTTGATGGGGGATGGCAACAGCATGATTCATTTATATCGTCAATTTGCGATGGGAGC
AGTTGCTGCAGCAATGATGCAGGTAGCAAGTGCAGCGGTCAATATTACCAATATTGTACCTATGCAGATTCCGGGACAAG
GGACAGAAATTCGAGTCATGTTTAATGGATTGCCGCCCCAGCCCCAGGCTTATCAGCTTGAACAGCCTTCGCGACTGATC
TTAGACTTTGATCAGGCCAAACAAAATCTTAAACAGCCTAGTATTCCGGTTGCTACCAATGAAGCAAGCGCAATTCATGT
GGCCTCTGATGAACAACGTTCCCGAATTATTGTAAGTTTAAAAGATGCAGGTGCCTTTACTACCCGTGTAGAAGGCAATA
CTTTTATTTTAAAGATTAATCCGGTAACAGGCGCGCCTACAGTATTGCCACAGCCAGTTGCTGTAGCACAGCAGCCTGCT
CAGGGTATCTCGAACATTGGTTTCCAGCGTGGAAGTCAGGGCGAGGGACAGGTTTTAATTGATTTTCTGAACCCGAATAC
TCCTGCTGATGTACAGCAGCAGGGAAGTAAAGTCATAGTCAGGATGCTGGGAAATAAAATCCCTTCCCATCTAATCCGCC
GTTTGAATATGAATGATTTTGCCACGCCGGTCTCGACTGTTGATGCCTATAATGAAGGCGGTAATGGTATTATTACTATT
CAATCAACTGGCAGTTATGAGTATATGGCGTATCAGACTGAGAACCGCTTAACAGTCAGTTTAAAGCGCCCGGAAGAAAA
GAGTACGGTCAAAACCCGTTCTGCACCTAATTATAGCGGTAAAAAGGTTTCACTCGACTTTCAGGATATTGAGGTTCGTC
GGGTATTACAGTTGTTAGCAGATTTCACTGGTATCAACCTGGTTGCAGCCGACTCTGTTCAGGGAAATATTACGTTGCGC
CTGAAAGATGTACCATGGGACCAGGCTTTAGACATTATTTTAAAAACCAAAAACCTGGATAAACGTCGTAATGGTGATGT
AATCTGGATTGCTCCGGTTGCAGAGCTGATTAAAGCAGAAGAGGAAGAAGCTAAGGCGATTGCGCAAAGTACCAGACTTA
TGCCTTTACAAACTGAATATATCCAGCTGAATTATGCAAAAGCTGTCGATATCGAAAAACTGATTACCCAAGGCAGAAAT
AGTGGTAATGGTAGTGCTAACGGTGCTTCAAACAATACGGAAGCACTGGGTGATAGTGTGGGAAGCCTGCTAAGTCCAAG
AGGAACCATTTCAATAGACCCACGTACCAATACCTTAATCATTAATGATACGGCTCAGAAACTTGACCAGATCCGCCGTA
TGATTGATCTTCTGGATGTAGCGGTAAAACAGGTGATGGTTGAGGCCCGTATTGTCAGGGCTAGTACTGACTTCACCAAA
GAAATGGGCGTGAAGTGGGGAATTCTTTCACAGGGTATTACCCGTAATAACAGCCTGCTGGTCGGCGGCAGTGAAACCAC
CTTATGGAATCTGCGTGATCCTGATGATGAAGGCAAATACACCATAGAGCGTCCACAAAACCTGAATGTGGATTTAGGCG
TTACAGCATCGGGTGCAAGCCGTATTGCCTTCGGTTTAATTAGTCTTTCTGATTTTATGCTGGATCTCGAATTGTCAGCC
TTGCAGGCTGATGGTTATGGTGAAGTCATTTCTACGCCGAAAGTACTAACAGCTGACAAACAGCAGGCCCGAGTTGCTTC
TGGTACCCAAATTCCCTACCAGTCTTCAGAGGGCGGTGGCGCCAATGCAGTTTCTACCACTGAATTTGTGGATGCTACTT
TAAGTCTGAATGTAACACCCAGTATTACTCCTGATGGTAAAATCCAGATGTTACTGAACATTACCAGCGATACTCCGGGG
AACCCGACACCAACCGGACAGATTGCGATTAACAAGAATGAAATTAATACTAATGTGCTGGTTAACAATGGTGAAACTGT
AGTCCTTGGCGGTATTTTTGAACAGGAAACCAGAAATACGCAAACGAAAGTACCTGTTCTCGGAGACCTGCCGGGTGTAG
GCCGTTTATTCCGCCGTGATGCTAAAAGTGATAACAAGCGTGAGTTACTGATTTTTGTTACACCACGAATTGTTAATGAC
AGTGCGACTGGAAATCATTAA

Domains

Predicted by InterproScan.

Secretin and TonB N terminus short domain (STN)

(307-352)

Bacterial type II/III secretion system short domain (Secretin_N)

(379-464)

AMIN domain (AMIN)

(55-136)

Bacterial type II and III secretion system protein (Secretin)

(560-718)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii D1279779

73.278

100

0.733
  pilQ Acinetobacter baumannii strain A118

73.14

100

0.731
  comQ Acinetobacter baylyi ADP1

73.072

98.209

0.718
  pilQ Pseudomonas aeruginosa PAK

39.807

100

0.398
  pilQ Legionella pneumophila strain ERS1305867

38.273

95.73

0.366
  pilQ Legionella pneumophila strain Lp02

38.273

95.73

0.366

Multiple sequence alignment