Detailed information    

insolico Bioinformatically predicted

Overview

Name   comO   Type   Machinery gene
Locus tag   ABLB95_RS13195 Genome accession   NZ_CP157451
Coordinates   2800011..2800721 (-) Length   236 a.a.
NCBI ID   WP_005404626.1    Uniprot ID   A0A2T1J168
Organism   Acinetobacter radioresistens strain XH1688     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2795011..2805721
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABLB95_RS13175 (ABLB95_13165) aroB 2795597..2796682 (-) 1086 WP_005404624.1 3-dehydroquinate synthase -
  ABLB95_RS13180 (ABLB95_13170) aroK 2796701..2797252 (-) 552 WP_005018052.1 shikimate kinase AroK -
  ABLB95_RS13185 (ABLB95_13175) pilQ 2797289..2799469 (-) 2181 WP_348908901.1 type IV pilus secretin PilQ family protein Machinery gene
  ABLB95_RS13190 (ABLB95_13180) pilP 2799487..2800014 (-) 528 WP_005018049.1 pilus assembly protein PilP Machinery gene
  ABLB95_RS13195 (ABLB95_13185) comO 2800011..2800721 (-) 711 WP_005404626.1 type 4a pilus biogenesis protein PilO Machinery gene
  ABLB95_RS13200 (ABLB95_13190) pilN 2800718..2801377 (-) 660 WP_138000910.1 PilN domain-containing protein Machinery gene
  ABLB95_RS13205 (ABLB95_13195) comM 2801377..2802435 (-) 1059 WP_005024205.1 pilus assembly protein PilM Machinery gene
  ABLB95_RS13210 (ABLB95_13200) ponA 2802597..2805143 (+) 2547 WP_034688125.1 penicillin-binding protein PBP1a -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 26946.23 Da        Isoelectric Point: 4.4700

>NTDB_id=1006993 ABLB95_RS13195 WP_005404626.1 2800011..2800721(-) (comO) [Acinetobacter radioresistens strain XH1688]
MSREEFDDLNQEDAKPAKRKMTLEAFLQQFNTLDTHNYGSWPFSVKLTCWIFLFLLVCAIGYFLAIRPKLEAISNAQAQE
QNLLNEFREKDSKLRNLQQYQAQLQEMEANFNEQLEQLPKETEIPGLVEDINVAGVSSGLKFKNIRLESEIRQEFFIEQP
IDIQATGDYHAFGSFVSTIAALPRIVTLHDFEITSTQAQNSDIPEVNYAVKAKTYRYVGNNEQPNTTDTPAGGQPQ

Nucleotide


Download         Length: 711 bp        

>NTDB_id=1006993 ABLB95_RS13195 WP_005404626.1 2800011..2800721(-) (comO) [Acinetobacter radioresistens strain XH1688]
ATGAGTCGTGAAGAATTCGATGATTTAAACCAGGAAGATGCTAAACCTGCTAAAAGAAAAATGACGCTAGAAGCCTTCCT
GCAACAGTTTAATACGCTGGATACACATAATTACGGCAGCTGGCCTTTTTCAGTCAAACTGACCTGCTGGATATTTCTGT
TTCTGCTGGTTTGTGCAATTGGCTATTTTTTAGCAATTCGCCCCAAACTTGAAGCTATTTCTAATGCGCAGGCACAAGAA
CAGAATCTGTTAAACGAGTTTCGTGAAAAGGACTCTAAACTGCGTAACTTACAGCAATACCAAGCACAACTACAGGAAAT
GGAAGCGAATTTTAATGAGCAACTGGAACAGTTGCCTAAAGAAACCGAGATTCCTGGACTGGTTGAAGATATTAACGTTG
CAGGAGTAAGTTCTGGCCTGAAATTTAAAAATATTCGTCTAGAAAGTGAAATTCGGCAGGAGTTCTTTATTGAACAGCCA
ATTGATATTCAGGCAACAGGTGATTATCATGCCTTTGGTTCTTTTGTGAGCACTATTGCGGCGCTTCCACGAATTGTAAC
CCTGCATGACTTTGAAATTACCAGTACACAGGCGCAGAACTCAGATATTCCAGAAGTAAATTATGCGGTGAAAGCTAAAA
CATACCGATATGTCGGTAATAATGAGCAGCCAAATACTACGGATACCCCAGCAGGAGGGCAGCCACAATGA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(74-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2T1J168

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comO Acinetobacter baylyi ADP1

67.755

100

0.703
  pilO Acinetobacter baumannii D1279779

71.946

93.644

0.674

Multiple sequence alignment